Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq24612 187 4e-42 >seq24612 Length=73035 Score = 187 bits (206), Expect = 4e-42 Identities = 583/901 (65%), Gaps = 4/901 (0%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||||||| ||| || || || || || | || || || |||||||| || ||| Sbjct 59101 GACATAACTGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 59160 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 | || || ||||| ||||||| ||||| | |||| || || || | | | Sbjct 59161 TGTAAGCTAATCAGCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAA 59220 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 ||||| || | |||||| || || ||||||||||| ||||| |||||| || | | Sbjct 59221 CCCAAAGCATCCAACAATCTGTCAGCCACAAATTCTATGTATGTACTCATCAAATCTCCA 59280 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || | || | || ||||| || | ||| || ||| || || Sbjct 59281 TTCATACCCACCAGCGCACAGGGCAGAGCATCACACACAAACTCCCTTTCTATCTCCACA 59340 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAA 49951 || |||| | || || || ||| || || | | | | || | ||| Sbjct 59341 GCCTCTGCAACGATTCCCCTGACTCGTTCCCCAGTCAGCTTCGTCCTCAGCAAACTGTAA 59400 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 | ||| || || ||||| ||||||| ||| |||||||| ||| | || || || | Sbjct 59401 AG--CAAGCACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATCAACTCATTCGAGA 59458 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || | ||||||||||| || |||||||| | ||||||||| || || || | Sbjct 59459 AAGTTAATCCGGGCATTAACCCCCGCTTTTTCAACCAAAATATTGAACAGAAACTTCCGG 59518 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT 50131 ||||||| || |||||||| ||||| || || | | |||| | | | | | Sbjct 59519 AAAAGAAAATCCCTTCTACACAAGCAAAAGCCACCAAACGCTCTGCGAAGGTTTCAGAGC 59578 Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 ||| ||||| | ||||| | |||||||||| |||||||| || || || || | Sbjct 59579 CATCGATCCAACGAAGGGCCCACTTCGCCTTCTTTTCAACACAAGGGATAGTCTCGATTG 59638 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | || | | ||||| | | || || | || | || | || | ||| | Sbjct 59639 CCCGGAACAACCTACTCTTTTCGTCAGAGTCCTTGATGTACGACTCCAACAGCAAACTGT 59698 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||| || ||||| || || |||||||| || || ||||| |||||| | ||||| | Sbjct 59699 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAATCCATAGAAAGCACGCGCCTCAG 59758 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 || || || ||| | || | | |||| | || || || || ||||| || Sbjct 59759 CAACTTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGG 59818 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | ||||||||||| | ||||| | || ||||| |||| || |||||| || | || Sbjct 59819 CAGCAAAAAACGCAAGCACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCC 59878 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||| | |||| ||||| ||| |||||||| | ||||| || |||||| || | Sbjct 59879 AATGACGAGTATCGGCAGATAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATAGCTT 59938 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 50551 | || ||||| | ||| || | | || || |||||||| ||| ||||| | ||| | Sbjct 59939 TCTTGTACATTTCCCAAATTTGTGGGTACTGAATTGGGAACATACAGAATCTGTCTGGGT 59998 Query 50552 T 50552 | Sbjct 59999 T 59999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717964676011720