Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq24416 82.4 8e-11 seq18302 82.4 8e-11 seq10662 82.4 8e-11 >seq24416 Length=70076 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || ||||| || || ||||||||||| | Sbjct 35437 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAATCAGCC 35378 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| || || || || ||| |||||| | |||||| || ||||| Sbjct 35377 AGAGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCTGGAGGA 35318 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || || || |||| | || | ||||| | ||| || Sbjct 35317 ATGCCTTCCTTATCCTGGATCTTGGCCTTTACGTTATCAATGGTGTCAGAACTTTCCACC 35258 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| || || | ||||| |||||||| |||||| Sbjct 35257 TCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTCACGAATATCTGCATA 35210 >seq18302 Length=24432 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || ||||||||||| || || || || || ||||| || ||| Sbjct 6969 GTTGATTCTTTCTGAATGTTGTAATCTGCCAGGGTCCTTCCATCCTCAAGTTGCTTTCCA 7028 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||||| || ||||| || || || ||||| || ||| ||| Sbjct 7029 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTA 7088 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | || || || | ||| | ||||| || |||||||| Sbjct 7089 ACATTGTCAATAGTATCTGAACTCTCGACCTCCAAAGTAATTGTCTTCCCTGTCAATGTC 7148 Query 143168 TTTACGAATATTTGCATA 143185 || || |||||||||||| Sbjct 7149 TTAACAAATATTTGCATA 7166 >seq10662 Length=13073 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || ||||||||||| || || || || || ||||| || ||| Sbjct 1376 GTTGATTCTTTCTGAATGTTGTAATCTGCCAGGGTCCTTCCATCCTCAAGTTGCTTTCCA 1435 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||||| || ||||| || || || ||||| || ||| ||| Sbjct 1436 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTA 1495 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | || || || | ||| | ||||| || |||||||| Sbjct 1496 ACATTGTCAATAGTATCTGAACTCTCGACCTCCAAAGTAATTGTCTTCCCTGTCAATGTC 1555 Query 143168 TTTACGAATATTTGCATA 143185 || || |||||||||||| Sbjct 1556 TTAACAAATATTTGCATA 1573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506799723765360