Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq24549 122 6e-23 seq18302 118 8e-22 seq24416 107 1e-18 seq10662 82.4 6e-11 >seq24549 Length=72154 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 58506 CCTCCTCTCAGTCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 58447 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||| | || || | || |||||||| | || ||||| || ||||| |||| Sbjct 58446 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 58387 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| || |||||| || ||| | || ||||| || | ||||||| Sbjct 58386 ATCCCTTCTTTGTCTTGGATCTTTGCT-TTCACATTATCAATGGTGTCTGAACTTTCTAC 58328 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || || || || ||||| || || ||||| || |||||| Sbjct 58327 CTCCAGGGTGATAGTCTTTCCAGTCAGTGTCTTAACAAAGATCTGCATA 58279 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || ||||| ||||| || || ||| |||| | || |||||||| Sbjct 57798 TGGAGGGTGGACTCCTTTTGGATGTTATAGTCTGCAAGAGTTCTACCATCCTCTAATTGC 57739 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | ||||| | ||| || || ||||||||||| ||||| ||| ||| Sbjct 57738 TTTCCAGCAAAGATCAACCTTTGCTGATCAGGGGGAATTCCTTCCTTGTCTTGAATCTTT 57679 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || || ||| | || || || | || ||||| || || || Sbjct 57678 GC-CTTGACATTGTCAATTGTGTCGGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCGGT 57620 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| Sbjct 57619 GAGGGTCTTAACAAAGATTTGCAT 57596 >seq18302 Length=24432 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | || || ||||| || ||||| || || || ||||| || || Sbjct 6711 CCTCCCCTCAAACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCA 6770 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||| | || || | |||||| ||||| | |||||||| || ||||| ||| Sbjct 6771 AGAGTCCTCCCATCCTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 6830 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| ||| |||||| || || | || |||||||| | |||| || Sbjct 6831 ATACCCTCCTTGTCTTGAATCTTTGCT-TTGACGTTGTCAATGGTATCTGAACTTTCAAC 6889 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || ||||| |||| || || ||||||||||||||| Sbjct 6890 CTCCAATGTAATTGTCTTACCAGTCAACGTCTTGACAAAAATTTGCATA 6938 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | ||| | || ||||| || ||||| || ||||||||||| Sbjct 6939 CCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGCC 6998 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | || || | ||| || ||||| | |||| | || ||||| ||| Sbjct 6999 AGGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 7058 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| || |||||| || ||| | || || ||||| | | || || Sbjct 7059 ATACCCTCCTTGTCTTGGATCTTTGCT-TTAACATTGTCAATAGTATCTGAACTCTCGAC 7117 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || ||||||| || || ||||| ||||||||| Sbjct 7118 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCATA 7166 >seq24416 Length=70076 Score = 107 bits (118), Expect = 1e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || || || | ||||||||| || || || || || |||||||| || |||| | Sbjct 31802 CTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCAGCCAGTGTTCTTCCA 31743 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || || ||||| | ||||| | ||| ||||| ||| || ||||||||| Sbjct 31742 TCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATACCTTCTTTG 31683 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCG-CTATTTTCTACATCTAAGGTAAT 15327 || ||| ||| ||| ||| | || ||||| ||| | |||| || || | |||||| Sbjct 31682 TCCTGAATCTTGGCCTTAACATTGTCAATGGTGTCGAGAACTTTCCACTTCAAGGGTAAT 31623 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||| || || ||||| |||||||| Sbjct 31622 AGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 31587 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| ||||| || || || ||||||||||| ||| | | ||||||| Sbjct 35420 AACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAATCAGCCAGAGTACGACCGTCTTC 35361 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||| || | ||||| | ||| ||||| ||||| ||||| || || Sbjct 35360 AAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCTGGAGGAATGCCTTCCTTATCCTG 35301 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || ||||| || | |||| || || | ||| ||||| || Sbjct 35300 GATCTTGGCCTTTACGTTATCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATGGTCTT 35241 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || || || |||||| Sbjct 35240 TCCAGTGAGGGTTTTCACGAATATCTGCATA 35210 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||||||||| ||| | || | ||||| Sbjct 35875 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTTCCATCTTCC 35816 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || ||||| | |||| | |||||| || ||||| || || ||||| | Sbjct 35815 AACTGCTTACCAGCAAAAATCAGTCTTTGTTGATCTGGGGGAATGCCCTCCTTGTCCTGA 35756 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||| || |||| || || || || ||||| || Sbjct 35755 ATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTTTCCACCTCCAAAGTGATGGTCTTG 35696 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| ||||| Sbjct 35695 CCAGTAAGAGTCTTCACGAAAATCTGCAT 35667 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/225 (68%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || ||||||||||| ||| | | ||||||| Sbjct 31258 ACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAATCTGCAAGAGTACGGCCGTCTTCA 31199 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | |||| | || ||||| ||||| ||||| ||||| Sbjct 31198 AGTTGCTTTCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 31139 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || ||||| ||| |||| || || | ||| ||||| || Sbjct 31138 ATCTTGGCTTTAACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTT 31079 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATT 15379 || || || ||||| ||||| || ||||| | | || | |||||| Sbjct 31078 CCAGTGAGGGTTTTAACAAAGATCTGCATCTGT-AACACAAAATT 31035 >seq10662 Length=13073 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | ||| | || ||||| || ||||| || ||||||||||| Sbjct 1346 CCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGCC 1405 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | || || | ||| || ||||| | |||| | || ||||| ||| Sbjct 1406 AGGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 1465 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| || |||||| || ||| | || || ||||| | | || || Sbjct 1466 ATACCCTCCTTGTCTTGGATCTTTGCT-TTAACATTGTCAATAGTATCTGAACTCTCGAC 1524 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || ||||||| || || ||||| ||||||||| Sbjct 1525 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCATA 1573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362029682579493