Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq24416 93.3 3e-14 seq23505 93.3 3e-14 >seq24416 Length=70076 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| || ||||||||||| || ||||| ||||||| || | | || || ||||| Sbjct 32019 GTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTACCATCTTCGAGCTG 31960 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || || |||||||| || || | ||||| ||||| ||| || Sbjct 31959 CTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGAATCTT 31900 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | |||||| | |||| || | || ||||| ||||| || Sbjct 31899 AGCCTTGACATTGTCAATAGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTACCAGT 31840 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||||||||| ||||| Sbjct 31839 CAAAGTCTTGACAAAAATCTGCAT 31816 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| || ||||||||||| || ||||| || |||| || | | || |||||||| Sbjct 36098 GTGCAAAGTTGACTCCTTTTGGATGTTGTAGTCTGCCAGAGTCCTTCCATCTTCCAGCTG 36039 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || | || ||||||||||| || ||| | ||| || ||||| ||| || Sbjct 36038 CTTCCCTGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 35979 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | |||||| | ||| || | |||| |||||| || || Sbjct 35978 AGCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAGAGTAACGGTTTTCCCAGT 35919 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||||||||| ||||| Sbjct 35918 CAACGTCTTGACAAAAATCTGCAT 35895 >seq23505 Length=59109 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || ||| | ||||| ||| | || ||||||||||| || |||||||||| Sbjct 2668 TTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCG 2727 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | ||||| ||||| ||||| ||| | || | |||||||| || | Sbjct 2728 CCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTG 2787 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| || || || || | | ||| || ||| ||| Sbjct 2788 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAA 2847 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| || || || || || || ||||| |||||||| Sbjct 2848 CCTCCAGGGTAATGGTCTTCCCGGTGAAGGTCTTCACAAAGATTTGCAT 2896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || ||| | ||||| ||| | || ||||||||||| || |||||||||| Sbjct 2440 TTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCG 2499 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | ||||| ||||| ||||| ||| | || | |||||||| || | Sbjct 2500 CCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCG 2559 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| || || || || | | ||| || ||| ||| Sbjct 2560 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAA 2619 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| ||||| || || || | || ||||||||||| |||||| Sbjct 2620 CCTCCAAGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATT 2669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414401653076962