Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq18302 116 3e-21 seq10662 89.7 4e-13 >seq18302 Length=24432 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| ||||| | ||||||||||| || ||| ||| || || || ||||| || | Sbjct 6711 CCTCCCCTCAAACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTC-TGC 6769 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | |||| || | ||||||||| ||||| ||||| || |||||||| | || Sbjct 6770 AAGAGTCCTCCCATCCTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 6829 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || ||| ||| ||| |||||| | ||| ||||||| || || Sbjct 6830 AATACCCTCCTTGTCTTGAATCTTTGCTTTGACGTTGTCAATGGTATCTGAACTTTCAAC 6889 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||| ||||| || || ||||| ||||| |||||||| Sbjct 6890 CTCCAATGTAATTGTCTTACCAGTCAACGTCTTGACAAAAATTTGCAT 6937 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| |||| | ||||||||||| || ||| ||| || || || ||||| || | Sbjct 6482 ACCTCCCCTCAGACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTC-TG 6540 Query 43954 TAATTGAC--GCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGA 44011 || || | || |||| || | |||||| || ||||| ||||| || |||||||| | Sbjct 6541 CAAGTGTCCTGC-CATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGG 6599 Query 44012 GGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCC 44071 || | ||| || || ||| ||| ||| ||| || | ||| ||||||| | |||| Sbjct 6600 GGAATACCCTCCTTGTCTTGAATCTTTGCTTTAACATTGTCAATGGTATCTGAGGACTCC 6659 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || || || || || || | |||||||| || || ||||| Sbjct 6660 ACCTCCAATGTGATAGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 6709 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| |||| || |||||||| |||| | ||| || | Sbjct 7009 CATCCTCAAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCCT 7068 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || ||| ||| || | ||| |||||||| ||| || || | |||| Sbjct 7069 TGTCTTGGATCTTTGCTTTAACATTGTCAATAGTATCTGAACTCTCGACCTCCAAAGTAA 7128 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || || ||||| |||||||||||||| Sbjct 7129 TTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 7165 >seq10662 Length=13073 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| |||| || |||||||| |||| | ||| || | Sbjct 1416 CATCCTCAAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCCT 1475 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || ||| ||| || | ||| |||||||| ||| || || | |||| Sbjct 1476 TGTCTTGGATCTTTGCTTTAACATTGTCAATAGTATCTGAACTCTCGACCTCCAAAGTAA 1535 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || || ||||| |||||||||||||| Sbjct 1536 TTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 1572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354631138161204