Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq22151 98.7 8e-16 seq24416 91.5 1e-13 seq24483 86.0 5e-12 >seq22151 Length=46047 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| | | |||||| |||| || ||||| |||||||| || ||| Sbjct 14004 TTAATCATAGTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATG 13945 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| |||| || ||||| Sbjct 13944 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATTAGTCTCTGC 13885 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 13884 TGGTCAGGAGGTATCCCTTCTTTGTC 13859 >seq24416 Length=70076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 19993 CCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA 20052 ||||||||| | ||| || || ||||| || || || |||||||| ||| ||| | Sbjct 31803 CCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCAGCCAGTGTTCTTCC 31744 Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112 ||||||||| || || || ||| |||| | ||| || || || || | |||||||| Sbjct 31743 ATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATACCTTCTTT 31684 Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCG-CCAGGTTCCGTTTCCACGGTAA 20171 ||| ||| || || || | | ||| | ||| | |||| ||| | ||||| Sbjct 31683 GTCCTGAATCTTGGCCTTAACATTGTCAATGGTGTCGAGAACTTTCCACTTCAAGGGTAA 31624 Query 20172 TGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || ||||| ||||| || || ||||| |||||||| Sbjct 31623 TAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 31587 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 || || || ||||| |||||||| || ||| ||| | |||||||| || || || Sbjct 36091 GTTGACTCCTTTTGGATGTTGTAGTCTGCCAGAGTCCTTCCATCTTCCAGCTGCTTCCCT 36032 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 || | || || ||||| || || ||| | |||||| ||||| ||| || ||| Sbjct 36031 GCGAAGATCAGTCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTC 35972 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | | ||| || ||| | |||| |||| |||| |||||| || |||||||| Sbjct 35971 ACATTGTCAATAGTATCAGAACTTTCCACCTCCAGAGTAACGGTTTTCCCAGTCAACGTC 35912 Query 20192 TTGACAAAAATTTGCAT 20208 ||||||||||| ||||| Sbjct 35911 TTGACAAAAATCTGCAT 35895 >seq24483 Length=75877 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| | | ||||| || | || || || |||||||| || ||| Sbjct 23919 TTGATCATAGTTCCTCCCCTGAGCCTCAGAACAAGGTGAAGGGTTGATTCTTTCTGAATG 23978 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| | || || ||||| Sbjct 23979 TTGTAATCAGCCAAAGTTCGACCATCTTCCAACTGTTTCCCAGCAAATATCAGTCTCTGC 24038 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC--GGCAA 20120 ||||| || | ||||||||| || ||||| Sbjct 24039 TGATCAGGAGGTATGCCTTCTTTATCCTGGCAA 24071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419413982996313