Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq23505 98.7 8e-16 seq26813 96.9 3e-15 seq18302 86.0 5e-12 >seq23505 Length=59109 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| || ||||| || ||||||||| ||||||||||| ||| Sbjct 2442 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCC 2501 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | ||||| ||||||||||| | | || || | |||||| || ||| Sbjct 2502 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCGGG 2561 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || ||||| | | ||||| |||| ||| | Sbjct 2562 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAACC 2621 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || |||||||| || || |||||||||||||| Sbjct 2622 TCCAAGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 2668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| || ||||| || ||||||||| ||||||||||| ||| Sbjct 2670 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCC 2729 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | ||||| ||||||||||| | | || || | |||||| || || Sbjct 2730 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 2789 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || ||||| | | ||||| |||| ||| | Sbjct 2790 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAACC 2849 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || ||||| || ||||||| || |||||||| || |||||| Sbjct 2850 TCCAGGGTAATGGTCTTCCCGGTGAAGGTCTTCACAAAGATTTGCATC 2897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || || |||||| || |||||||||||||| | || ||||||| Sbjct 3143 CACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTC 3202 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | | ||||||||| || | | |||||| ||| Sbjct 3203 AAGCTGCTTTCCGGCGAAAATAAGCCTTTGCTGATCCGGGGGAATCCCTTCCTTATCCTG 3262 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | || ||||||| |||| ||| | || ||||| || Sbjct 3263 GATCTTAGCCTTAACGTTGTCAATTGTATCGGAGCTCTCCACCTCTAGGGTGATGGTCTT 3322 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| ||||| || || ||||||||| Sbjct 3323 TCCGGTGAGTGTTTTTACGAAGATCTGCATC 3353 >seq26813 Length=197329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | | ||| | ||||| |||||| Sbjct 149201 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGTCCATCCTCAAGCTGC 149142 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || |||| || |||||||| || || | | |||||||||| ||| || Sbjct 149141 TTACCTGCGAAAATCAACCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTA 149082 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||||| ||| | || || || ||||| || Sbjct 149081 GCCTTAACATTGTCGATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTACCCGTC 149022 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 149021 AGGGTCTTCACAAAGATCTGCAT 148999 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | | ||| | ||||| |||||| Sbjct 97330 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGTCCATCCTCGAGCTGC 97389 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || |||| || | |||||| || || | | |||||||||| || || Sbjct 97390 TTACCTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGATCTTA 97449 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||| ||| | || || || || || || Sbjct 97450 GCCTTGACATTGTCAATGGTGTCAGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTT 97509 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 97510 AGGGTCTTCACAAAGATCTGCAT 97532 >seq18302 Length=24432 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | || | ||||| ||||| || ||| |||||| || ||||| || || || Sbjct 6482 ACCTCCCCTCAGACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGC 6541 Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 || |||| || | ||||| || || ||||| | | || ||||||||||| || Sbjct 6542 -AAGTGTC-CTGCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGG 6599 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTC 48675 || | || |||||||| ||| || ||| || | | | |||||||| | ||||| Sbjct 6600 GGAATACCCTCCTTGTCTTGAATCTT-TGCTTTAACATTGTCAATGGTATCTGAGGACTC 6658 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | ||| | ||| || || || || || || || ||||| || ||||||||| Sbjct 6659 CACCTCCAATGTGATAGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATC 6710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421077296051873