Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24612 181 1e-40 >seq24612 Length=73035 Score = 181 bits (200), Expect = 1e-40 Identities = 595/920 (65%), Gaps = 6/920 (1%) Strand=Plus/Plus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||||||| ||| || || || || || | || || || |||||||| || ||| Sbjct 59101 GACATAACTGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 59160 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117 | || || ||||| ||||||| ||||| | |||| || || || | | | Sbjct 59161 TGTAAGCTAATCAGCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAA 59220 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 ||||| || | |||||| || || || |||||||| ||||| |||||| || | | Sbjct 59221 CCCAAAGCATCCAACAATCTGTCAGCCACAAATTCTATGTATGTACTCATCAAATCTCCA 59280 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || | || | || ||||| || | ||| || ||| || || Sbjct 59281 TTCATACCCACCAGCGCACAGGGCAGAGCATCACACACAAACTCCCTTTCTATCTCCACA 59340 Query 33238 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAA 33295 || |||| | || || || ||| || || | | | | || | ||| Sbjct 59341 GCCTCTGCAACGATTCCCCTGACTCGTTCCCCAGTCAGCTTCGTCCTCAGCAAACTGTAA 59400 Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 | ||| || || ||||| ||||||| ||| |||||||| ||| | || || || | Sbjct 59401 AG--CAAGCACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATCAACTCATTCGAGA 59458 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | ||||||||||| || |||||||| | ||||||||| ||| ||| ||| | Sbjct 59459 AAGTTAATCCGGGCATTAACCCCCGCTTTTTCAACCAAAATATTGAACAGAAACTTCCGG 59518 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 ||||||| || |||||||| |||||| || | | | |||| | | | | Sbjct 59519 AAAAGAAAATCCCTTCTACACAAGCAAAAGCCACCAAACGCTCTGCGAAGGTTTCAGAGC 59578 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 ||| ||||| | ||||| | |||||||||| |||||||| || || || || | Sbjct 59579 CATCGATCCAACGAAGGGCCCACTTCGCCTTCTTTTCAACACAAGGGATAGTCTCGATTG 59638 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | || | | ||||| | | || || | || | || | || | ||| | Sbjct 59639 CCCGGAACAACCTACTCTTTTCGTCAGAGTCCTTGATGTACGACTCCAACAGCAAACTGT 59698 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||| || ||||| || || |||||||| || || ||||| |||||| | ||||| | Sbjct 59699 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAATCCATAGAAAGCACGCGCCTCAG 59758 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTG 33714 || || || ||| | || | | |||| || | || || || || ||||| | Sbjct 59759 CAACTTGGACATCTTT-CATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 59817 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || ||||||||||| | ||||| | || |||| |||| | | |||||| || | | Sbjct 59818 GCAGCAAAAAACGCAAGCACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 59877 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 |||| | |||| ||||| ||| |||||||| | ||||| || |||||| || Sbjct 59878 CAATGACGAGTATCGGCAGATAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATAGCT 59937 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 || || ||||| | ||| || | || || |||||||| ||| ||||| | ||| Sbjct 59938 TTCTTGTACATTTCCCAAATTTGTGGGTACTGAATTGGGAACATACAGAATCTGTCTGGG 59997 Query 33895 TTTGGTGCAAGGATGGGTTC 33914 || | || || | ||| || Sbjct 59998 TTAGAGGCGAGCAAGGGCTC 60017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622683436368680