Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq23505 107 2e-18 seq18302 84.2 2e-11 seq24416 82.4 6e-11 >seq23505 Length=59109 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || || || ||||||||||| |||||||| || ||| Sbjct 2442 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCC 2501 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| | || | || ||| ||||| || Sbjct 2502 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCGGG 2561 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 2562 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTGTCGATGGTGTCGGAGCTCTCAA 2619 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || ||||| || || |||||||||||||||||| Sbjct 2620 CCTCCAAGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATT 2669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || || || ||||||||||| |||||||| || ||| Sbjct 2670 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCC 2729 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| | || | || ||| ||||| || Sbjct 2730 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 2789 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 2790 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTGTCGATGGTGTCGGAGCTCTCAA 2847 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| || ||||| | || || ||||| || ||||| Sbjct 2848 CCTCCAGGGTAATGGTCTTCCCGGTGAAGGTCTTCACAAAGATTTGCAT 2896 >seq18302 Length=24432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| ||| || ||||||||||| || ||||| ||||| || Sbjct 6483 CCTCCCCTCAGACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCA 6542 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || || | ||||| | |||||| || ||| | || | ||||| ||||| || Sbjct 6543 AGTGTCCTGCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 6602 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || |||||| || || | | | | || || || |||| Sbjct 6603 ATACCCTCCTTGTCTTGAATCTTTGCT--TTAACATTGTCAATGGTATCTGAGGACTCCA 6660 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || || ||||| || || || || |||||||| Sbjct 6661 CCTCCAATGTGATAGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 6709 >seq24416 Length=70076 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| |||||||||||||| ||||||||||| |||| || | | || || | || Sbjct 32018 TGCAAAGTGGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTACCATCTTCGAGCTGC 31959 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| ||||| || | ||||| ||||| ||| | Sbjct 31958 TTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGAATCTTA 31899 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||| || |||| |||| |||||||| || || ||| Sbjct 31898 GCCTTGACATTGTCAATAGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTACCAGTC 31839 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||||||||||||| Sbjct 31838 AAAGTCTTGACAAAAATCTGCAT 31816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404920768660270