Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq24416 87.8 2e-12 >seq24416 Length=70076 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/217 (69%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG- 111245 |||||||| ||||| || || |||| ||||| || |||||| | ||| |||| || Sbjct 31587 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAAGTGGAA---AGT 31643 Query 111246 ---CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||| | ||| | | || || || ||| ||||||||||| | || || Sbjct 31644 TCTCGACACCATTGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGA 31703 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 || |||||| | |||| ||| || || || ||||||||| | ||| |||| ||||| Sbjct 31704 CCAGCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACACTGGCTGATTA 31763 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||||| || || ||||| || || ||| | |||||| Sbjct 31764 CAATATTCAGAAGGAATCGACCCTTCATCTTGTGTTG 31800 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || || || | || ||||| ||||| || |||| |||| | Sbjct 35667 ATGCAGATTTTCGTGAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTGGAAAGCTCT 35726 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | | || || || ||| ||||| || ||| ||||| |||||| Sbjct 35727 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAA 35786 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || |||| ||| || || || ||||||||| | ||| |||| ||||| || Sbjct 35787 CAAAGACTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACTCTGGCTGATTACAAC 35846 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || || || || | ||||| || ||||| Sbjct 35847 ATCCAGAAGGAATCAACCCTTCACTTGGTCCTCCGTCTCCGTGGTGG 35893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422865357586600