Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq18302 100 2e-16 seq10662 100 2e-16 seq24416 96.9 2e-15 >seq18302 Length=24432 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||| ||||| || || || || ||||| |||| || || Sbjct 7165 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTCGAGAGTTCA 7106 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||| || || || |||||| | ||| | |||| Sbjct 7105 GATACTATTGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 7046 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || ||||| || ||| || || |||| |||||||| Sbjct 7045 CAGAGGCTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCCTGGCAGATTACAAC 6986 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| || || || Sbjct 6985 ATTCAGAAAGAATCAACCCTGCA 6963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || ||| | || || || || || ||| | ||| || || Sbjct 7393 ATGCAGATATTTGTCAAGACACTTACTGGAAAGACTATCACCCTTGAAGTTGAGAGTTCA 7334 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| ||| ||||| |||||| | ||| | |||| Sbjct 7333 GACACAATTGACAATGTCAAAGCAAAGATTCAAGATAAGGAGGGTATTCCTCCAGACCAG 7274 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||||||||| ||||| || ||| || || ||||||| |||||| Sbjct 7273 CAGAGGTTGATCTTTGCTGGCAAGCAACTTGAGGATGGAAGGACCCTGGCCGACTACAAT 7214 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 |||||||| || || || | ||| | || | ||||| Sbjct 7213 ATTCAGAAAGAGTCAACCTTACATCTTGTTCTTCGTTT 7176 >seq10662 Length=13073 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||| ||||| || || || || ||||| |||| || || Sbjct 1572 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTCGAGAGTTCA 1513 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||| || || || |||||| | ||| | |||| Sbjct 1512 GATACTATTGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1453 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || ||||| || ||| || || |||| |||||||| Sbjct 1452 CAGAGGCTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCCTGGCAGATTACAAC 1393 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| || || || Sbjct 1392 ATTCAGAAAGAATCAACCCTGCA 1370 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || ||| | || || || || || ||| | ||| || || Sbjct 1800 ATGCAGATATTTGTCAAGACACTTACTGGAAAGACTATCACCCTTGAAGTTGAGAGTTCA 1741 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||| || ||||| |||||| | ||| | |||| Sbjct 1740 GACACAATTGACAATGTTAAAGCAAAGATCCAAGATAAGGAGGGTATTCCTCCAGACCAG 1681 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||||| || ||| || || ||||||| |||||| Sbjct 1680 CAGAGGTTAATCTTTGCTGGTAAGCAACTTGAGGATGGAAGGACCCTGGCCGACTACAAT 1621 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 |||||||| || || || | ||| | || | ||||| Sbjct 1620 ATTCAGAAAGAGTCAACCTTACATCTTGTTCTTCGTTT 1583 >seq24416 Length=70076 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || ||||| || |||||| | ||| |||| | Sbjct 31587 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAAGTGGAAAGTTCT 31646 Query 21894 -GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || ||||| || ||| || ||||| ||| | || | |||| Sbjct 31647 CGACACCATTGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGACCA 31706 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | || |||||||| || || | |||||| || ||| |||| |||||||| Sbjct 31707 GCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACACTGGCTGATTACAA 31766 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||||||| || |||||| | || || Sbjct 31767 TATTCAGAAGGAATCGACCCTTCATCTTGTGTT 31799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357976956346042