Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq24549 87.8 1e-12 seq24483 87.8 1e-12 >seq24549 Length=72154 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/238 (68%), Gaps = 20/238 (8%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || || ||||||||||||||||| ||| || |||||||| ||||| || || Sbjct 58279 ACCACCCCTTAGGCGCAGCACCAGATGAAGAGTGGATTCTTTCTGAATATTGTAGTCAGC 58220 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || | || || | |||||| || ||||| |||| | ||||||||| | Sbjct 58219 -AAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGAG 58161 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC-- 34076 | | || || |||||| ||||||| ||| | || | ||| ||| || Sbjct 58160 GAATGCCTTCCTTGTCCTGAATTTTTGCCTTGA---------CATTGTCAATAGTGTCAG 58110 Query 34077 -GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||| ||| || || || ||||| || | |||||||||||||| ||||| Sbjct 58109 AGCTTTCAACCTCAAGGGTAATAGTCTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 58052 >seq24483 Length=75877 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| ||| || || ||||| || || ||||||||||||||||| ||| Sbjct 23931 CCTCCCCTGAGCCTCAGAACAAGGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGCC 23990 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | || ||||| || || || ||||||||||| | ||||||||| Sbjct 23991 AAAGTTCGACCATCTTCCAACTGTTTCCCAGCAAATATCAGTCTCTGCTGATC 24043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396898481846146