Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq24549 104 2e-17 seq18302 95.1 8e-15 >seq24549 Length=72154 Score = 104 bits (114), Expect = 2e-17 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| |||| ||| | |||| |||||| || ||||| || || || | || || Sbjct 58266 CGCAGCACCAGATGAAGAGTGGATTCTTTCTGAATATTGTAGTCAGCAAGGGTACGACCA 58207 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| || || ||||||| || | ||||||||| | || | |||||| ||| Sbjct 58206 TCCTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGAGGAATGCCTTCCTTG 58147 Query 39625 TCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 || | | |||||| || | || ||| || ||||| | |||||| || || | ||| Sbjct 58146 TC-CTGAATTTTTGCCTTGACATTGTCAATA--GTGTCAGAGCTTTCAACCTCAAGGGTA 58090 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || |||||||| || |||||||||||| Sbjct 58089 ATAGTCTTTCCAGTCAAAGTTTTCACAAAGATCTGCATG 58051 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || || | || | ||| || ||||| || ||||| || || Sbjct 58051 GCCACCACGCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTATAGTCAGC 57992 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | | |||| ||||| ||||| ||| | || || || | ||||||||| | || Sbjct 57991 AAGAGTTCTTCCATCCTCCAACTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGG 57932 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| || || |||||| || | | ||| || ||||| | ||| || Sbjct 57931 AATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATA--GTGTCGGAGCTCTCA 57874 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | ||||||||| || || || || ||||| || |||||||||||| Sbjct 57873 ACCTCAAGAGTAATTGTCTTCCCAGTCAAGGTTTTCACAAAGATCTGCATG 57823 >seq18302 Length=24432 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | |||||||| |||||||| | |||| || || || || ||||| | Sbjct 6707 CATC-CCTCCCCTCAAACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGT 6765 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| || | |||||| || |||| || ||||||||||| || | Sbjct 6766 CTGCAAGAGTCCTCCCATCCTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTG 6825 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 ||| | || || ||||| || ||| ||| | ||| | | | || |||| ||| Sbjct 6826 GGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTGA-CGTTGTCAATGGTATCTGAACTT 6884 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| |||||||| ||||| || || || || || || || ||||| Sbjct 6885 TCAACCTCCAATGTAATTGTCTTACCAGTCAACGTCTTGACAAAAATTTGCAT 6937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347226196385009