Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq24612 143 3e-29 seq22878 107 2e-18 seq24630 96.9 4e-15 >seq24612 Length=73035 Score = 143 bits (158), Expect = 3e-29 Identities = 569/886 (64%), Gaps = 17/886 (2%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | ||| | || || Sbjct 59115 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAA-GCTAATCA 59173 Query 18729 T-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 ||||| ||||||||||||| | |||| || || || | | || || | | Sbjct 59174 GCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCA 59233 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | ||| || || ||||||| || ||||| |||||| ||| | |||||| || | | Sbjct 59234 ACAATCTGTCAGCCACAAATTCTATGTATGTACTCATCAAATCTCCATTCATACCCACCA 59293 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | || || ||||| | ||| || |||||| | || ||||||| | | Sbjct 59294 GCGCACAGGGCAGAGCATCACACACAAACTCCCTTTCTATCTCCACAGCCTCTGCAACGA 59353 Query 18908 TAGATACAACTCTATCTTCATT-AGGAGGGTAT--AGAAGATGTTTAAACATCAAACATG 18964 | |||| || || | || || || | | | |||| ||| || | Sbjct 59354 TTCCCCTGACTCGTTCCCCAGTCAGCTTCGTCCTCAGCAAAC-TGTAAAG--CAAGCACG 59410 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||||||||| || | || |||||||| ||||| ||||| || || ||||| || | Sbjct 59411 CAAAATCACAGTGCAAACCTTCGTCTCTTGAAATCAACTCATTCGAGAAAGTTAATCCGG 59470 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 |||| | || | ||||| ||||| ||||| ||| || ||| |||||||| || | Sbjct 59471 GCATTAACCCCCGCTTTTTCAACCAAAATATTGAACAGAAACTTCCGGAAAAGAAAATCC 59530 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 ||||||| |||||||| || | | ||| | | | ||| || |||| Sbjct 59531 CTTCTACACAAGCAAAAGCCACCAAACGCTCTGCGAA---GGTTTCAGAGCCATCGATCC 59587 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | || ||||| | |||||||||| ||||| || || ||||| || | || | Sbjct 59588 AACGAAGGGCCCACTTCGCCTTCTTTTCAACACAAGGGATAGTCTCGATTGCCCGGAACA 59647 Query 19205 GATACATACGC---TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 || ||| | || || | || || | || | || | || ||||||||||| | Sbjct 59648 ---ACCTACTCTTTTCGTCAGAGTCCTTGATGTACGACTCCAACAGCAAACTGTACATCT 59704 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | ||||| ||||| || || || || || ||||| || ||| | || || | | | Sbjct 59705 CGGAATGGATATTCTCAATGGCGATTTGGAATCCATAGAAAGCACGCGCCTCAGCAACTT 59764 Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 | || || | || ||| | | | || || ||| || || || || |||| Sbjct 59765 GGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCAA 59824 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCAT 19441 |||| || | ||||| | || ||||| ||||| | || |||| | | ||||| | Sbjct 59825 AAAACGCAAGCACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAATGAC 59884 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | |||| ||||| ||| |||||||| | ||||| ||||| ||| ||||| || | Sbjct 59885 GAGTATCGGCAGATAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATAGCTTTCTTGT 59944 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 |||| | ||| || | | || || || || || ||| ||||| Sbjct 59945 ACATTTCCCAAATTTGTGGGTACTGAATTGGGAACATACAGAATCT 59990 >seq22878 Length=52695 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||||| ||||| | ||| | || | || ||| || | ||| || Sbjct 22387 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 22328 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | ||||| ||||| ||||||||| ||| || | | ||||| | || Sbjct 22327 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACCGA 22268 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || || || || || || |||| || | ||||||| ||||| |||||||| || Sbjct 22267 AACTCCAATTCCTCCAGCAGATTTACTAATAACAGCACACTCCTTAAGAGTATCATATAT 22208 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 22207 GCCCTCAATACTATCATCTTTCAT 22184 >seq24630 Length=73539 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || ||||| || | |||||||||||||| ||| | || | | ||| || ||||| ||| Sbjct 28031 CCCCCTTGGTCAACATATCTGGCAGTATCATTAAATACACGCAGCATAGGCACAATTCCA 27972 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| ||||| ||| ||||| ||| |||| | ||| || | || Sbjct 27971 TTTGATGTTCCATTTGTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGAT 27912 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | |||||| ||||| || ||||| || Sbjct 27911 ACACCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTGTCATATATG 27852 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || ||||||||||| |||| Sbjct 27851 CCCTCAATACTATCATCCTTCAT 27829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | |||||| | ||||||||||||||| | ||||| | || | ||| | Sbjct 27519 AGTGCCAGCATTAAACAGCGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 27460 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | || |||| || |||||| | ||| || || || | |||||| | ||| | Sbjct 27459 ATATGTCTTGATGGCAGATTCAATATCCTCCTTG-TGGATTCCAACAGATACTCTCATCA 27401 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||| || ||||| |||||||| | || || ||||| || || | || | Sbjct 27400 GCATGTGTTGTGGCCTTTCTACAATTTTTCCCTGAATCTTTAAAAGGTAAGACCTCTCAA 27341 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| |||||||| || | || |||||| | |||| Sbjct 27340 GGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCAT 27299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561870796107720