Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq25355 136 1e-26 seq26976 132 1e-25 seq24366 131 5e-25 seq26577 123 7e-23 seq22494 105 2e-17 seq24551 93.3 1e-13 >seq25355 Length=133448 Score = 136 bits (150), Expect = 1e-26 Identities = 220/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || || ||||| ||| | ||| || | |||||| || ||||| ||| ||||| Sbjct 80133 CATTATATCCTCCATGGCCTTCACTAACCGCCTCTGAATGTACCCAGTCTCAGAAGTTTT 80192 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | ||||||||||||||||||||| | || | ||| Sbjct 80193 CACAGCAGTATCAATCAGACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCCTGCGG 80252 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | |||| | | | || |||| || |||||||| || || || || Sbjct 80253 AGTCAATCCCCGGAGATATGAATTCTCCACAAAACCACGACTTTCTGGACCATAATCATC 80312 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 ||||||||| || || || || | || | | | | ||| | || ||||| ||||| |||| Sbjct 80313 CTTGGTAAAATGAGGAAGAGTACGGTCTATGA-ACCCGAAAGGAATACGTTTTCCTTCAA 80371 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | ||||| || |||| || | | |||| || || || || | | ||| ||||| || | Sbjct 80372 CATTCTGTTGCCCCACACAAGCAGTCATTTGAGATATGTTGATAAAACTTCCCTTCGACC 80431 Query 302864 CAGCATTTACCATA 302877 ||||| | |||||| Sbjct 80432 CAGCAGTAACCATA 80445 >seq26976 Length=275583 Score = 132 bits (146), Expect = 1e-25 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || ||||| | ||| ||||| || ||||| |||||| | |||| ||| Sbjct 50461 GGCTATCAGCCCACAGCGCTCACAAACATGCACTCTGTATGCATCACTTTGGTCAAATAA 50402 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| | ||| || ||| |||||||| | |||||||||||| |||||||| || || Sbjct 50401 CCGCTCTTTGAGAAAATGAGCAGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCC 50342 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||||||||||||||||| || | || ||| || |||||||| | ||||| | || Sbjct 50341 AAAACGAAGACCACCATCACGTGACCGACCTTCTGCAGGCTGCCTTGTGAGGATTTGCAC 50282 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 |||||| | | ||| ||| |||| ||||| ||||| || ||||||||| | Sbjct 50281 AGGACCTCTACCTCTAGAATGAATCTTGTCATCAACCATGTGCTTCAGCCGCTGGTAGTA 50222 Query 251643 TGCGGGACCGATGAAGAT 251660 | |||||| | ||| || Sbjct 50221 CGTGGGACCAAGGAATAT 50204 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 233262 AAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGAC 233321 |||||| | |||||||||||||||||||||||| || ||||| || |||| ||| |||| Sbjct 50389 AAAATGA-GCAGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCCAAAACGAAGAC 50331 Query 233322 CACCATCATTTGACCTACC 233340 |||||||| ||||| ||| Sbjct 50330 CACCATCACGTGACCGACC 50312 >seq24366 Length=69435 Score = 131 bits (144), Expect = 5e-25 Identities = 324/478 (68%), Gaps = 19/478 (4%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC---CAATACAACAATAGATTCG 288930 || ||| |||||||||||| | ||| ||||| | || | ||| ||| |||| | Sbjct 44959 AAGGCTTTGTCTAATATATCAGGTCTATTTGTGCCAGCAAGTACTACTACACCAGATGTG 44900 Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATTAAGTGTTTGTTCCCTTTCAT 288988 | |||| |||||||||||| || | || | |||||| | || ||| | ||||| Sbjct 44899 G-TTGC--AAATCCATCCAT--TTCTACAAGCAGTTGATTTAAAGTACTTTCACGTTCAT 44845 Query 288989 CATTTGAACCTCTTGAATCACCCGAATCGCTC-CtttttttACCAACAGCATCAATTTCG 289047 ||||| |||| | | | || ||| | ||| | ||||| ||||||||| || Sbjct 44844 CATTT---CCTCCAGCA-AAGCCTCCCCGCCCTCTTGCTCGACCAATAGCATCAATCTCA 44789 Query 289048 TCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGG 289107 |||||||||| | || || | | |||||| || |||||| || || | Sbjct 44788 TCAATGAAAACTATACTAGGTGCACATTGTCTTGCCTCCTGAAATAAGCTCCTAACTCTA 44729 Query 289108 GATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGT 289166 | || ||||| ||||||| |||| || | |||||| || | || | |||| | || | Sbjct 44728 GCTGGTCCAACACCAACAAACATCTCCATAAATTCTGACCCAGA-AATTGAGAGAAAAGG 44670 Query 289167 TACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 |||| | ||| |||||| || | || |||||||| || || || ||||| || || Sbjct 44669 TACACCAGATTCTCCTGCTGTAGCTTTAGCTAGAAGTGTTTTTCCAGTCCCAGGAGGACC 44610 Query 289227 CTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCT 289285 | ||| ||| | ||||| || | |||||| |||| | | || ||||||| ||| ||| Sbjct 44609 CACTAGCAGAGCACCCTTAGGAATTTTTGCTCCCAACTG-CTCGTATTTCTTGGGGTTCT 44551 Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | | ||| | || | |||| || ||| | || ||||| |||||||| || ||||| Sbjct 44550 TCAGAAAGTGCACGAATTCCATAATTTCTTGCTTAGCCTCGTCACATCCAGCCACATC 44493 Score = 114 bits (126), Expect = 4e-20 Identities = 329/499 (66%), Gaps = 13/499 (3%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | ||||| | ||| ||| |||||||||||| ||| ||||| | || Sbjct 57576 ATCAAATCGACCAGGCCTTAATAAGGCTTTGTCTAATATATCAAGTCTATTTGTACCAGC 57517 Query 288912 CAATACAACAATA---GATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGA 288966 | |||||| | | ||| |||| || |||||||||||| || | || | |||| Sbjct 57516 AAGTACAACTACACCAGATGTGGTT-GC--AAATCCATCCAT--TTCTACAAGCAGTTGA 57462 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || | ||| ||| | ||||||||||| || || ||| || ||| || | Sbjct 57461 TTTAAAGTTCTTTCACGTTCATCATTTGCTCCAGAAGAGAGTCCCC--TCCCTC-TTGCT 57405 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||| |||||||| || || |||||||| | || || | | |||||| || Sbjct 57404 CGACCAATTGCATCAATCTCATCTATGAAAATTATACTAGGTGCACATTGTCTTGCCTCC 57345 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||| ||||| | | || ||||| ||||||| |||| || | |||||| ||| Sbjct 57344 TGAAATAAGCTCCTTACTCTAGCTGGTCCAATACCAACAAACATCTCCATAAATTCTGAA 57285 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | | || | |||| | || |||||| || | || ||||||||| Sbjct 57284 CCAGAAATACAGAGAAAAGGTACACCAGACTCTCCTGCTGTAGCTTTAGCTAGAAGTGTC 57225 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || || || ||||| || || ||| ||| | ||||| || | ||| || || | Sbjct 57224 TTTCCAGTCCCAGGAGGACCAACTAGAAGAGCACCCTTAGGAATTTTGGCTCCTAACTCC 57165 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||||||| || |||| | || | |||| ||| | ||||| || ||||| Sbjct 57164 TCGTATTTCTTGGGATTCTTAAGGAAGTGGACAAACTCCATGATTTCATGCTTAGCCTCG 57105 Query 289327 TCACATCCTGCTACATCAG 289345 |||||||| || ||||||| Sbjct 57104 TCACATCCAGCCACATCAG 57086 >seq26577 Length=143161 Score = 123 bits (136), Expect = 7e-23 Identities = 285/419 (68%), Gaps = 14/419 (3%) Strand=Plus/Plus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || || | ||| || || || |||||||||||||||||| ||| Sbjct 122755 AAACCATCCATTTCAGTCAATAGTTGGTTCAGCGTCTGTTCCCTTTCATCATTT---CCT 122811 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | | | | | | || || |||| ||||||||||||||||| |||| || | Sbjct 122812 CCTCCA--ATTCCAGTCCCT-CTTTGGCGCCCAACAGCATCAATTTCATCAACAAATACA 122868 Query 289060 ACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| ||||| | || ||| ||| | || | || || || ||||| | Sbjct 122869 ATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAAGA--TCACGGACTCGAGAGGCTCCTA 122926 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 ||||||| |||| || || ||||| ||| | || | |||| | |||| ||| ||| Sbjct 122927 CACCAACAAACATCTCAACGAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCT 122985 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || | |||| | || || || || || || || ||||| || || | | ||| Sbjct 122986 TCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGA 123045 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 || || ||||| | ||||| | | || || ||||||| |||| |||||||| Sbjct 123046 ACACCTTTTGGAATACGAGCCCCCACTGCAGTAAATCTCTCAGGTTTCTTCAAAAATTCC 123105 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 || | ||| || || | |||||| ||||| ||| || || |||||| |||| |||| Sbjct 123106 ACGACCTCCATAAAATCTTGTTTTGCTTCATCTACA-CCAGCAACATCATCAAATGTAA 123163 >seq22494 Length=49389 Score = 105 bits (116), Expect = 2e-17 Identities = 322/481 (67%), Gaps = 25/481 (5%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATA---GATTCG 288930 || ||| |||||||||||| | ||| |||||| | || | || ||| | | ||| | Sbjct 24236 AAGGCTTTGTCTAATATATCAGGTCTATTTGTTCCAGCAAGTATAACCACACCAGATGTG 24177 Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATT--AAGTGTTTGTTCCCTTTC 288986 ||| || ||| || ||||| || || | |||||| ||||| || || | || Sbjct 24176 GTT-GC--AAACCCGTCCAT--TTCAACAAGCAGTTGATTTAAAGTGCTT--TCACGCTC 24124 Query 288987 ATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt--ACCAACAGCATCAATT 289044 ||| | | |||| |||| | || ||| |||| || | ||||| |||||||| Sbjct 24123 ATCGTGT---CCTCCTGAAA-AGCCACCTCG-TCCTCTTGCTCGACCAATGGCATCAATC 24069 Query 289045 TCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACA 289104 || ||||||||||| | || || | | || || || |||||| || || Sbjct 24068 TCATCAATGAAAATTATACTAGGCGCACACTGCCTTGCCTCCTGAAATAAGCTCCTAACT 24009 Query 289105 CGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAAT 289164 |||| || ||||| |||||| ||||||| | ||| || || | || | | || ||| Sbjct 24008 CGGGCTGGTCCAACGCCAACAAACATTTCCATAAAATCTGACCCAGAAA-TAGAGAGAAA 23950 Query 289165 -GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGG 289223 | |||| | || |||||| || | |||||||| ||||| || || ||||| || Sbjct 23949 AGGTACACCAGACTCTCCTGCTGTAGCTTTGGCCAGAAGCGTCTTCCCAGTCCCAGGAGG 23890 Query 289224 TCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGC 289282 ||| | | ||| | |||||||| | ||| || |||| | | || |||||||| ||| Sbjct 23889 ACCCACAAGAAGAGCACCCTTTGGAATTTTCGCTCCCAACTG-CTCATATTTCTTCGGGT 23831 Query 289283 TCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACAT 289342 | || | || | || | ||| | ||| | ||||||||||||||||| || |||| Sbjct 23830 TTTTAAGGAAGTGGACGAACTCCATGATTTCTTGCTTTGCCTCATCACATCCAGCCACAT 23771 Query 289343 C 289343 | Sbjct 23770 C 23770 >seq24551 Length=72183 Score = 93.3 bits (102), Expect = 1e-13 Identities = 274/417 (66%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || || | ||||| | || || ||||| ||||||||| |||| Sbjct 56434 AACCCATCCATTTCAGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTTCCACCT 56493 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | | || | || || | || || ||||||||||| || ||||| || | Sbjct 56494 CCA-AGTCCTGCACCTCTCTGCCTT-----CCCACAGCATCAATCTCATCAATAAACACA 56547 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || | || | |||| | |||| || || || || | || ||||| | | Sbjct 56548 ATGCAAGGTGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACA 56607 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 || ||| ||| || ||||| || || || | || || | || | |||| ||||| Sbjct 56608 CCCACAAACAACTCAACAAACTCTGATGCTGC-ACAAGAGAAAAACGGTACACCAGCTTC 56666 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || |||||||| || || | ||| ||||| || || || ||||| || |||| ||| Sbjct 56667 ACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGGTGGACCAACTAAAAGACA 56726 Query 289239 TCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 || ||||||| || || || ||||| |||| || ||||| | || | || || Sbjct 56727 CCCTTTTGGTATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTTTTCAGGAAATC 56783 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | ||| | | || |||| || | |||| || || |||||||||||||| Sbjct 56784 CACCACTTCTTGTAACTCCAATTTAGCTTGATCAGCACCAGCAACATCAGCAAAAGT 56840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471178834381201