Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq18302 87.8 2e-12 seq10662 87.8 2e-12 seq24549 82.4 7e-11 seq24416 82.4 7e-11 >seq18302 Length=24432 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || |||||||| || ||||||||||| || || || || || ||||| || ||| Sbjct 6969 GTTGATTCTTTCTGAATGTTGTAATCTGCCAGGGTCCTTCCATCCTCAAGTTGCTTTCCA 7028 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| | ||||| || ||||| || || || ||||| || ||| ||| Sbjct 7029 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTA 7088 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| || || || | ||| | ||||| || |||||||| Sbjct 7089 ACATTGTCAATAGTATCTGAACTCTCGACCTCCAAAGTAATTGTCTTCCCTGTCAATGTC 7148 Query 137395 TTTACGAATATTTGCATA 137412 || || |||||||||||| Sbjct 7149 TTAACAAATATTTGCATA 7166 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | | |||||| || ||||| | || || || || || ||||| || || Sbjct 6483 CCTCCCCTCAGACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCA 6542 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || || || ||||||||||||||| |||||| ||| ||||| || || || Sbjct 6543 AGTGTCCTGCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 6602 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| ||| ||| ||| | | || | || |||| || || || Sbjct 6603 ATACCCTCCTTGTCTTGAATCTTTGCTTTAACATTGTCAATGGTATCTGAGGACTCCACC 6662 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || |||| || || ||||| || ||||| Sbjct 6663 TCCAATGTGATAGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 6709 >seq10662 Length=13073 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || |||||||| || ||||||||||| || || || || || ||||| || ||| Sbjct 1376 GTTGATTCTTTCTGAATGTTGTAATCTGCCAGGGTCCTTCCATCCTCAAGTTGCTTTCCA 1435 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| | ||||| || ||||| || || || ||||| || ||| ||| Sbjct 1436 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTA 1495 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| || || || | ||| | ||||| || |||||||| Sbjct 1496 ACATTGTCAATAGTATCTGAACTCTCGACCTCCAAAGTAATTGTCTTCCCTGTCAATGTC 1555 Query 137395 TTTACGAATATTTGCATA 137412 || || |||||||||||| Sbjct 1556 TTAACAAATATTTGCATA 1573 >seq24549 Length=72154 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | || | || ||||| | ||| || ||||| || ||||||||||| Sbjct 58506 CCTCCTCTCAGTCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 58447 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || ||| || || || || || |||||| | || | ||| ||||| || || || Sbjct 58446 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 58387 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || ||| ||| | | || | ||||||| |||||| Sbjct 58386 ATCCCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATGGTGTCTGAACTTTCTACC 58327 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| || |||| ||| || || || || |||||| Sbjct 58326 TCCAGGGTGATAGTCTTTCCAGTCAGTGTCTTAACAAAGATCTGCATA 58279 >seq24416 Length=70076 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| || |||| || ||||| || || ||||||||||| | Sbjct 35437 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAATCAGCC 35378 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| || || || || ||| |||||| | |||||| || ||||| Sbjct 35377 AGAGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCTGGAGGA 35318 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| || || || || |||| | || | ||||| | ||| || Sbjct 35317 ATGCCTTCCTTATCCTGGATCTTGGCCTTTACGTTATCAATGGTGTCAGAACTTTCCACC 35258 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | ||||| || || | ||||| |||||||| |||||| Sbjct 35257 TCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTCACGAATATCTGCATA 35210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488337144363600