Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq22878 116 5e-21 seq24630 104 3e-17 >seq22878 Length=52695 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | |||||||||||||| ||| Sbjct 22386 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 22327 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| || | | |||||||| | || Sbjct 22326 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACCGAA 22267 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || |||| || | |||||| || | || |||||||| Sbjct 22266 ACTCCAATTCCTCCAGCAGATTTACTAATAACAGCACACTCCTTAAGAGTATCATATATG 22207 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||||||| ||||| | || || |||||| Sbjct 22206 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 22165 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| ||| ||| | || || Sbjct 22064 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 22005 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| | || || || | | ||| ||||||| Sbjct 22004 ATAAGTCTTGATGGCAGATTCAATATCATCTTTGTGGATCCCAACAGAGACTCGCATCAG 21945 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | |||||| ||| || || || || ||||| || ||||| Sbjct 21944 CATATGTTGTGGCCTTTCTACAACTTTTCCATCAATCTTTAAGAGGTAAGACCGCTCCAG 21885 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 21884 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 21837 >seq24630 Length=73539 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 ||||||||||| | |||| | || | |||||| || | ||| ||||| ||| | |||||| Sbjct 28016 TATCTGGCAGTATCATTAAATACACGCAGCATAGGCACAATTCCATTTGATGTTCCATTT 27957 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 |||||| ||| ||||| || | || || || || | ||||| ||| ||||| || Sbjct 27956 GTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGATACACCAATTCCCCCA 27897 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 || ||| || | |||||| || | ||||||||||| ||||| || |||||| Sbjct 27896 GCTGATTTGCTAATAACAGCACATTCCTTAAGAGTGTCATATATGCCCTCAATACTATCA 27837 Query 69946 TCTATCATGTTAAGAAGAAAACAGCTA 69972 || ||||| | || || |||||| Sbjct 27836 TCCTTCATGCATATCAGGAAGCAGCTA 27810 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||| | || |||||||| ||||||||||| || ||| | || || Sbjct 27519 AGTGCCAGCATTAAACAGCGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 27460 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| | || || ||||| |||||| || || ||||| | | || | ||||| Sbjct 27459 ATATGTCTTGATGGCAGATTCAATATCCTCCTTGTGGATTCCAACAGATACTCTCATCAG 27400 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| |||| | || || || ||||| || | || || Sbjct 27399 CATGTGTTGTGGCCTTTCTACAATTTTTCCCTGAATCTTTAAAAGGTAAGACCTCTCAAG 27340 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| || || || || Sbjct 27339 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 27292 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||||| |||||| | || |||||| || || || || ||||| ||| ||||||| Sbjct 28551 CTCTTGTTCATACTTCGTGTATAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 28492 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 |||| ||| ||||||| | ||| ||||| || ||| | ||| ||||| || |||| Sbjct 28491 AGGAGCCTCACTTGGACAGAACAAAGACCATACCCCAT--TGCTTTGAACTCTTTGCATA 28434 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 || ||||| || | ||||||||| ||| || ||||||| | || ||| ||||| Sbjct 28433 AAAAGATCTGGCACCCAAAGAGC-ATAGAAAAGATCTCGTGCTCGATTCTCTTC 28381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686617954227720