Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq18302 105 6e-18 seq12531 105 6e-18 seq28317 102 7e-17 seq24416 86.0 5e-12 seq10662 82.4 6e-11 >seq18302 Length=24432 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || ||||||||||| | | ||||| | || || ||||| |||||| Sbjct 6285 GTAGACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGCCCATCCTCAAGCTGCTTACCG 6344 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||||||||| || || | || || ||||| ||||| |||| Sbjct 6345 GCGAATATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGTATCTTTGCTTTC 6404 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| |||| | || || || | || || | ||| || |||||||| Sbjct 6405 ACATTGTCAATAGTATCTGAGCTCTCCACCTCCAATGTGATCGTTTTCCCGGTCAGAGTC 6464 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| ||||| |||||| || Sbjct 6465 TTCACGAAGATCTGCATACCT 6485 >seq12531 Length=12345 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || ||||||||||| | | ||||| | || || ||||| |||||| Sbjct 11946 GTAGACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGCCCATCCTCAAGCTGCTTACCG 12005 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||||||||| || || | || || ||||| || || |||| Sbjct 12006 GCGAAGATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGTATTTTTGCTTTC 12065 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| |||| | || || || | || |||| ||| || |||||||| Sbjct 12066 ACATTGTCAATAGTATCTGAGCTCTCCACCTCCAATGTGATAGTTTTCCCGGTCAGAGTC 12125 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| ||||| |||||| || Sbjct 12126 TTCACGAAGATCTGCATACCT 12146 >seq28317 Length=665 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || ||||||||||| | | ||||| | || || ||||| |||||| Sbjct 381 GTAGACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGCCCATCCTCAAGCTGCTTACCG 440 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||||||||| || || | || || ||||| || || |||| Sbjct 441 GCGAAGATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGTATTTTTGCTTTC 500 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| |||| | || || || | || || | ||| || |||||||| Sbjct 501 ACATTGTCAATAGTATCTGAGCTCTCCACCTCCAATGTGATNGTTTTCCCGGTCAGAGTC 560 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| ||||| |||||| || Sbjct 561 TTCACGAAGATCTGCATACCT 581 >seq24416 Length=70076 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | | || ||| || | ||| | || || ||||| |||||||||||||| Sbjct 35665 CCTCCCCTGAGCCTCAACACAAGATGAAGAGTCGATTCTTTCTGAATATTGTAGTCAGCG 35606 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | ||| ||||| || |||| || | || || || || || Sbjct 35605 AGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGG 35546 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| ||||| | | || | ||||| | | ||| || Sbjct 35545 ATGCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCTTTCCACC 35486 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||| || || || |||||||||||||| ||||| Sbjct 35485 TCAAGAGTGATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 35439 >seq10662 Length=13073 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | || | |||||| || || ||||| ||||||||||||||| | Sbjct 1574 CCACCCCTCAAACGAAGAACAAGATGTAAGGTTGACTCTTTCTGAATATTGTAGTCGGCC 1633 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | || || || || ||||| || | || | | ||| || || || || Sbjct 1634 AGGGTCCTTCCATCCTCAAGTTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGAGGA 1693 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| |||||| ||| | | || | ||||||| |||||| Sbjct 1694 ATACCCTCCTTATCTTGGATCTTTGCTTTAACATTGTCAATTGTGTCTGAACTCTCAACT 1753 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| || || || || || || ||||| || |||||| Sbjct 1754 TCAAGGGTGATAGTCTTTCCAGTAAGTGTCTTGACAAATATCTGCATA 1801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424758975526776