Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq24549 93.3 3e-14 seq18302 91.5 1e-13 seq24416 87.8 1e-12 >seq24549 Length=72154 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||| | ||||| || |||||| |||| || |||||| | Sbjct 58052 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAGACTATTACCCTTGAGGTTGAAAGCTCT 58111 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| |||||| ||||| ||||| |||| || | Sbjct 58112 GACACTATTGACAAT--GTCAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGATC 58169 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| ||||| ||| | || || | || | | | | || |||| Sbjct 58170 AGCAGAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 58229 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 | || || ||||| |||| | ||| |||| |||| Sbjct 58230 ATATTCAGAAAGAATCCACTCTTCATCTGGTGCTGCG 58266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | |||||||| ||||| |||| || || ||| || Sbjct 57824 ATGCAGATCTTTGTGAAAACCTTGACTGGGAAGACAATTACTCTTGAGGTTGAGAGCTCC 57883 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| |||||| || || ||||| |||| || | Sbjct 57884 GACACTATTGACAAT--GTCAAGGCAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATC 57941 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| | || || || ||||||||||| ||||| || | | | | |||| | || || Sbjct 57942 AGCAGAGATTGATCTTCGCCGGAAAACAGTTGGAGGATGGAAGAACTCTTG-CTGACTAT 58000 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| ||| ||| | || | || | ||| ||||||| ||| Sbjct 58001 AACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTGCGTGGTGGC 58051 >seq18302 Length=24432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG--CA 27847 |||||||||||||| || || | ||||| || |||||| | || || ||||| || Sbjct 6937 ATGCAAATTTTTGTCAAGACGTTGACTGGTAAGACAATTACATTGGAGGTTGAAAGTTCA 6878 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || |||| |||||| ||| || ||||| || ||| |||| || | Sbjct 6877 GATACCATTGACAA--CGTCAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 6820 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTAC 27966 |||| || || || ||||| ||||||||| | || || | | | |||| | || || Sbjct 6819 AGCAGCGTTTGATCTTTGCTGGAAAACAACTTGAGGATGGGAGGACTCTTG-CAGACTAT 6761 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| |||| | |||||||| ||||||||| | || || Sbjct 6760 AACATCCAGAAGGAGTCCACTCTCCATTTGGTGTTGCGTTTGAGGGGAGG 6711 >seq24416 Length=70076 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || ||||| || || || |||| || |||||| || Sbjct 31050 ATGCAGATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCC 31109 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || ||| || || ||||| ||||| |||| || | Sbjct 31110 GACACCATTGACAAT--GTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACC 31167 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| || | |||||||| ||||| ||| | || |||| || | |||| | |||||| Sbjct 31168 AGCAGAGGCTGATTTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTTG-CAGATTAC 31226 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 31227 AACATCCAGAAGGAGTCAACTCTCCACTTGGTCCTTCGTCTTCGTGGTGG 31276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355715490326271