Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq18302 118 9e-22 seq24549 109 5e-19 seq24416 89.7 4e-13 >seq18302 Length=24432 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || ||||||||||| || ||| ||| || || || ||||| || ||| Sbjct 6483 CCTCCCCTCAGACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCA 6542 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| | | || ||||| ||||| || ||||| || | |||||||||||| | ||| Sbjct 6543 AGTGTCCTGCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 6602 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| |||| | ||| | | || || | | | | | | ||||| |||||||| Sbjct 6603 ATACCCTCCTTGT-CTTGAATCTTTGCTTTAACATTGTCAATGGTATCTGAGGACTCCAC 6661 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| |||||| | || || ||||| || || || ||||| |||||| Sbjct 6662 CTCCAATGTGATAGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATC 6710 Score = 100 bits (110), Expect = 2e-16 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || ||||||||||| || ||| ||| || || || ||||| || ||| Sbjct 6711 CCTCCCCTCAAACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCA 6770 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || ||||| ||||| || ||||| || | |||||||||||| | ||| Sbjct 6771 AGAGTCCTCCCATCCTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 6830 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCG-CCACCGTATCGCTCGAC--TC 39233 | | ||| |||| | ||| | | || ||||| ||| | | | |||| || || || Sbjct 6831 ATACCCTCCTTGT-CTTGAATCTTTGCTTTGA-CGTTGTCAATGGTAT--CTGAACTTTC 6886 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || | || || |||| ||| || ||||| |||||||| Sbjct 6887 AACCTCCAATGTAATTGTCTTACCAGTCAACGTCTTGACAAAAATTTGCAT 6937 >seq24549 Length=72154 Score = 109 bits (120), Expect = 5e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||||||||| || ||| |||||| || || || ||||| ||| Sbjct 58506 CCTCCTCTCAGTCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 58447 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || | | || |||||||| ||||| ||||| || | |||||||||||| ||||| Sbjct 58446 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 58387 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC--TCC 39234 | || |||||||| ||| || ||| | | | | || | || || || Sbjct 58386 ATCCCT-TCTTTGTCTTGGATCTTTGCTTTCACATTATCAATGGTGT--CTGAACTTTCT 58330 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| |||||| | ||||| ||||| || ||||||||||| ||||| Sbjct 58329 ACCTCCAGGGTGATAGTCTTTCCAGTCAGTGTCTTAACAAAGATCTGCAT 58280 >seq24416 Length=70076 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || ||||| ||||| || || |||| ||| Sbjct 31258 ACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAATCTGCAAGAGTACGGCCGTCTTCA 31199 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || || || ||||| || || | ||||||||| | ||| | || || |||||| | Sbjct 31198 AGTTGCTTTCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 31139 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||| | | | | || ||| ||||| || | ||||| | ||| Sbjct 31138 ATCTTGGCTTTAACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTT 31079 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || || |||||||||||||| ||||||| || Sbjct 31078 CCAGTGAGGGTTTTAACAAAGATCTGCATCTGTA 31045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429368271898049