Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq24612 154 2e-32 seq22878 96.9 5e-15 >seq24612 Length=73035 Score = 154 bits (170), Expect = 2e-32 Identities = 582/907 (64%), Gaps = 16/907 (2%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||||||| ||| ||||| || || || | ||||| || |||||||| || ||| Sbjct 59101 GACATAACTGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 59160 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 | || || ||||| ||||||||||||| ||||| || || || | | | Sbjct 59161 TGTAAGCTAATCAGCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAA 59220 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 || || | | || ||| || || || |||||||| ||| | |||||| || | | Sbjct 59221 CCCAAAGCATCCAACAATCTGTCAGCCACAAATTCTATGTATGTACTCATCAAATCTCCA 59280 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || | || | || ||||| || | |||||| ||| || ||| Sbjct 59281 TTCATACCCACCAGCGCACAGGGCAGAGCATCACACACAAACTCCCTTTCTATCTCCACA 59340 Query 48075 GCATCCACTATTATCGATGTTAC-CGTTTCC---TCA-CTTGGTGGATACAACAAATGTT 48129 || || | | || | || |||| || ||| ||| || || |||| | Sbjct 59341 GCCTCTGCAACGATTCCCCTGACTCGTTCCCCAGTCAGCTTCGTCCT--CAGCAAACTGT 59398 Query 48130 TAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAG 48189 || || | || ||||||||||| || | |||||| ||||| ||| || || || | Sbjct 59399 AAAGCA---AGCACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATCAACTCATTCG 59455 Query 48190 AAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATC 48249 | || || | |||||||||| || || ||||| | ||||||||||| |||| || Sbjct 59456 AGAAAGTTAATCCGGGCATTAACCCCCGCTTTTTCAACCAAAATATTGAACAGAAACTTC 59515 Query 48250 CAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT 48309 | |||||||| || |||||||| ||||| || | | |||| || | || || Sbjct 59516 CGGAAAAGAAAATCCCTTCTACACAAGCAAAAGCCACCAAACGCTCTGCGAA---GGTTT 59572 Query 48310 C---GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 | | | ||||| || | ||||| | |||||||| | |||||||| || || | Sbjct 59573 CAGAGCCATCGATCCAACGAAGGGCCCACTTCGCCTTCTTTTCAACACAAGGGATAGTCT 59632 Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAA 48426 | || || || | | ||||| | || || | ||| | || | | | Sbjct 59633 CGATTGCCCGGAACAACCTACTCTTTTCGTCAGAGTCCTTGATGTACGACTCCAACAGCA 59692 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 ||| ||||| ||||| || ||||| ||||| || || || ||||| || ||| | || Sbjct 59693 AACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAATCCATAGAAAGCACGCG 59752 Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 | || | | || || || | || | | |||| | ||||| || || || | Sbjct 59753 CCTCAGCAACTTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGT 59812 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT 48606 | ||||||||||| || | ||||| | || |||| |||| ||| || || | Sbjct 59813 CTGAGGCAGCAAAAAACGCAAGCACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGT 59872 Query 48607 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 | | ||| | | |||| |||| ||| |||||||| || ||||| || |||||| Sbjct 59873 TTTCCCAATGACGAGTATCGGCAGATAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCA 59932 Query 48667 CTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTAT 48726 ||||| || ||||| | ||| || | ||| || |||||||| ||| ||||| | Sbjct 59933 TAGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATTGGGAACATACAGAATCTGT 59992 Query 48727 TTGGATT 48733 ||| || Sbjct 59993 CTGGGTT 59999 >seq22878 Length=52695 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||||| || |||| |||| | || | | ||| |||||||| || Sbjct 22387 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 22328 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||||||| ||| | | |||||||| | || Sbjct 22327 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACCGA 22268 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| || | ||| || || | ||||| || || Sbjct 22267 AACTCCAATTCCTCCAGCAGATTTACTAATAACAGCACACTCCTTAAGAGTATCATATAT 22208 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| ||||| ||||| ||||| | || || |||||| Sbjct 22207 GCCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 22165 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| | ||||| ||| ||||| || || ||||| ||| ||||||| Sbjct 22899 CTCTCTTTCATACTTTGTATACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 22840 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 ||| ||||||||| || | || ||||| | || | | | || |||| || ||||| Sbjct 22839 AGGAGCTTCATTTGGACAAAATAAAGACCATTGTCCGT-TGCTTTGGACTCTTTCCATAA 22781 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||| | ||| |||||| || |||||||||| | ||| ||||| Sbjct 22780 AAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGATGCTCTTC 22729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694374668546720