Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq26813 125 7e-24 seq18302 122 8e-23 seq28317 109 5e-19 seq23505 107 2e-18 seq12531 107 2e-18 seq24416 95.1 1e-14 >seq26813 Length=197329 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| | Sbjct 149225 CCACCACGGAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 149166 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| || ||||| |||| ||||| ||||| | ||| Sbjct 149165 AGTGTTCGTCCATCCTCAAGCTGCTTACCTGCGAAAATCAACCGCTGCTGGTCTGGTGGA 149106 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| | || || | ||| | | | ||||| ||||| || Sbjct 149105 ATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATTGTCGATGGTGTCTGATGACTCTAC 149047 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || ||||||||||| ||||| || || ||||||||||| Sbjct 149046 CTCCAAGGTAATAGTCTTACCCGTCAGGGTCTTCACAAAGATCTGCATGTT 148996 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| ||||| | Sbjct 97306 CCACCACGAAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 97365 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || ||||| |||| | ||| ||||| | ||| Sbjct 97366 AGTGTTCGTCCATCCTCGAGCTGCTTACCTGCGAAAATCAACCTCTGCTGGTCTGGTGGA 97425 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || || | || | | | ||||| ||||| || Sbjct 97426 ATGCCTTCCTTGTCC-TGGATCTTAGCCTTGACATTGTCAATGGTGTCAGATGACTCTAC 97484 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || ||||| || || |||||||| || Sbjct 97485 CTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCATTTT 97535 >seq18302 Length=24432 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| ||||||| ||| || ||| ||||||||| ||||||||||| | || || | Sbjct 6492 AGACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCAAGTGTCCTG 6551 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || || || || || || |||| ||||| ||||| | ||||| | |||| Sbjct 6552 CCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCC 6611 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| | ||||||| ||| | | | || || ||||||||||||| || Sbjct 6612 TTGT-CTTGAATCTTTGCTTTAACATTGTCAATGGTATCTGAGGACTCCACCTCCAATGT 6670 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 6671 GATAGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 6709 Score = 113 bits (124), Expect = 4e-20 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||| ||||| || || ||||| | ||||||||| | || || Sbjct 6273 ACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGCCCATCCTCA 6332 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| ||||||||||| || | |||||| || | |||| | ||||| | | || Sbjct 6333 AGCTGCTTACCGGCGAATATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTAT-CTTG 6391 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | ||||||| || | | | ||| || ||| ||||||||||| || ||||| Sbjct 6392 TATCTTTGCTTTCACATTGTCAATAGTATCTGAGCT---CTCCACCTCCAATGTGATCGT 6448 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || ||||| ||||| ||||| |||||||| Sbjct 6449 TTTCCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 Score = 113 bits (124), Expect = 4e-20 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| ||||||| ||| || ||| ||||||||| ||||||||||| | || || | | | Sbjct 6722 ACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCAAGAGTCCTCCC 6781 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || || || || || || || |||| ||||| ||||| | ||||| | |||||| Sbjct 6782 ATCCTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 6841 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCACCTCCACCGTT 41824 || | ||| | ||||||| ||| | || | || || || || ||||||| || Sbjct 6842 GT-CTTGAATCTTTGCTTTGACGTTGTCA-ATGGTATCTGAACTTTCAACCTCCAATGTA 6899 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| |||| |||||| || ||||| ||||| Sbjct 6900 ATTGTCTTACCAGTCAACGTCTTGACAAAAATTTGCAT 6937 >seq28317 Length=665 Score = 109 bits (120), Expect = 5e-19 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||| ||||| || || ||||| | ||||||||| | || || Sbjct 369 ACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGCCCATCCTCA 428 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| || || | |||||| || | |||| | ||||| || || Sbjct 429 AGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTATCT-TG 487 Query 41774 ATTTTTTGCTTCAACGACGACAC-AGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 ||||||||| || | || ||| || |||| |||||||||| || || || Sbjct 488 TATTTTTGCTTTCACATTGTCAATAGTATCTGAGCTC---TCCACCTCCAATGTGATNGT 544 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || ||||| ||||| ||||| |||||||| Sbjct 545 TTTCCCGGTCAGAGTCTTCACGAAGATCTGCAT 577 >seq23505 Length=59109 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| || ||||||||| || || ||||| | Sbjct 2214 CCACCACGGAGACGGAGGACAAGGTGCAGAGTTGACTCCTTCTGGATATTGTAGTCCGCA 2273 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || || || |||| | ||| ||||| | |||| Sbjct 2274 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2333 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || |||| || | | | ||||| |||||| Sbjct 2334 ATTCCCTCCTTGTCC-TGAATCTTAGCTTTCACATTGTCGATCGTGTCAGAACTCTCCAC 2392 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| || || |||||||| Sbjct 2393 CTCCAAGGTGATGGTCTTCCCTGTAAGGGTCTTAACAAAGATCTGCAT 2440 >seq12531 Length=12345 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||| ||||| || || ||||| | ||||||||| | || || Sbjct 11934 ACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGCCCATCCTCA 11993 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| || || | |||||| || | |||| | ||||| || || Sbjct 11994 AGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTATCT-TG 12052 Query 41774 ATTTTTTGCTTCAACGACGACAC-AGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 ||||||||| || | || ||| || |||| |||||||||| || || || Sbjct 12053 TATTTTTGCTTTCACATTGTCAATAGTATCTGAGCTC---TCCACCTCCAATGTGATAGT 12109 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || ||||| ||||| ||||| |||||||| Sbjct 12110 TTTCCCGGTCAGAGTCTTCACGAAGATCTGCAT 12142 >seq24416 Length=70076 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| || || | Sbjct 35209 CCACCACGGAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCA 35150 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||||||||| || || || ||||| | ||| ||||| | ||| Sbjct 35149 AGGGTCCGACCATCTTCGAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 35090 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||||||| || | || || | ||| | | | ||||| ||| || Sbjct 35089 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCT---TTC 35034 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || || || || || |||||||||||||| Sbjct 35033 CACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACGAAAATCTGCAT 34983 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || |||| ||| |||||| || ||||| ||||| | Sbjct 32042 CCACCACGGAGACGGAGGACAAGGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCCGCC 31983 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || ||||||||||| || || || ||||| | ||| ||||| | || Sbjct 31982 AGAGTCCTACCATCTTCGAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGCGGG 31923 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | || | | | ||| || |||||| Sbjct 31922 ATTCCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCAATAGTATCAGAACTCTCCAC 31864 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || ||||| |||| ||||| || ||||||||||| Sbjct 31863 CTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAAATCTGCAT 31816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||||| ||||| || || | Sbjct 35893 CCACCACGGAGACGGAGGACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCC 35834 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || | |||||| || || || ||||| | ||||| || | |||| Sbjct 35833 AGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTTTGTTGATCTGGGGGA 35774 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||||||| ||| | || || | ||| | | | ||||| ||| || Sbjct 35773 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTT---TC 35718 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || || || ||||| |||||||||||||| Sbjct 35717 CACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTCACGAAAATCTGCAT 35667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462108254707600