Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12 102 2e-16 seq10 100 6e-16 seq2 100 6e-16 seq9 98.7 2e-15 seq8 98.7 2e-15 seq6 98.7 2e-15 seq5 98.7 2e-15 seq4 98.7 2e-15 seq3 98.7 2e-15 seq1 98.7 2e-15 >seq12 Length=83305730 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 77818320 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 77818261 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 77818260 GCCCCACGGTGGGC 77818247 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1705320 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1705379 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1705380 CCCACGGTGGGC 1705391 >seq10 Length=82529941 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 80779955 CTGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 80779896 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 80779895 AGCCCCACGGTGGGC 80779881 Score = 100 bits (110), Expect = 6e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||| | |||||||||||||||| |||||||||| || || |||| || |||||||||| Sbjct 81105420 AAACACAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 81105479 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 81105480 GTTCGAGCCCCACGGTGGGC 81105499 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 80776333 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 80776274 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 80776273 CCCACGGTGGGC 80776262 >seq2 Length=59803892 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 51785104 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 51785045 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 51785044 CCCCACGGTGGGC 51785032 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 59126943 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 59126884 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 59126883 CCCACGGTGGGC 59126872 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 230390 TTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA 230449 || |||| || || || | |||| ||||||| | ||||| ||| |||| ||| || Sbjct 59230835 TTGCAGATGCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGG 59230894 Query 230450 TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTG 230509 | || ||||| | || | ||| | | ||||| || || ||||| ||| | | || | Sbjct 59230895 TGGGAATGAATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGG 59230954 Query 230510 TTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCA 230569 ||| | ||||| || || ||||||| || |||| || |||| | |||||||| | Sbjct 59230955 ATGCTTTGGGTTATGACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGA 59231014 Query 230570 TTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || | ||||||||||| || ||||| || ||| | || | || ||||||| Sbjct 59231015 TTAGTTTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGA 59231068 >seq9 Length=84057508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4248925 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4248984 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4248985 CCCACGGTGGGC 4248996 >seq8 Length=70546659 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2268616 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2268557 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2268556 CCCACGGTGGGC 2268545 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 63558000 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63558059 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 63558060 CCCACGGTGGGC 63558071 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 67594784 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 67594725 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 67594724 CCCACGGTGGGC 67594713 >seq6 Length=60730942 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 48460239 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48460298 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 48460299 CCCACGGTGGGC 48460310 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 52242061 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 52242120 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 52242121 CCCACGGTGGGC 52242132 >seq5 Length=77991103 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 74641200 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 74641259 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 74641260 CCCACGGTGGGC 74641271 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| | |||||||||||||||| Sbjct 75111713 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCCTGTGGTCGTGGGTTCGA 75111772 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 75111773 GCCCCACGGTGGGC 75111786 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| | |||||||||||||||| Sbjct 75112346 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCCTGTGGTCGTGGGTTCGA 75112287 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 75112286 GCCCCACGGTGGGC 75112273 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 76371521 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 76371462 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 76371461 CCCACGGTGGGC 76371450 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/76 (87%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT--TC 165765 |||| ||||||||||||| |||||||||| || || |||| || |||||||||||| || Sbjct 75111184 TTGCTCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCTC 75111243 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 75111244 GAGCCCCACGGTGGGC 75111259 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/76 (87%), Gaps = 2/76 (3%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT--TC 165765 |||| ||||||||||||| |||||||||| || || |||| || |||||||||||| || Sbjct 75112875 TTGCTCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCTC 75112816 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 75112815 GAGCCCCACGGTGGGC 75112800 >seq4 Length=77197300 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4036171 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4036112 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4036111 CCCACGGTGGGC 4036100 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 61877775 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 61877834 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 61877835 CCCACGGTGGGC 61877846 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 75238218 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 75238277 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 75238278 CCCACGGTGGGC 75238289 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4113465 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4113524 Query 165770 CCCACGATGGGC 165781 |||| | ||||| Sbjct 4113525 CCCATGGTGGGC 4113536 >seq3 Length=75414019 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1701520 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1701579 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1701580 CCCACGGTGGGC 1701591 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5386609 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5386668 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5386669 CCCACGGTGGGC 5386680 Score = 96.9 bits (106), Expect = 7e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 ||||| || ||| |||||||||||| |||||||||| || || |||| || ||||||| Sbjct 73770001 TTAAACAACTAGCCTGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 73769942 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 73769941 TGGGTTCGAGCCCCACGGTGGGC 73769919 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||||||| |||| Sbjct 59716439 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAGC 59716498 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 59716499 CCCACGGTGGGC 59716510 >seq1 Length=109333515 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 95187845 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 95187786 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 95187785 CCCACGGTGGGC 95187774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823837359560