Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 >seq2 Length=59803892 Score = 141 bits (156), Expect = 1e-28 Identities = 378/561 (67%), Gaps = 15/561 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 |||||| || || || || | ||||||||||| || | || || || || ||||| Sbjct 59230779 ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAA 59230720 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AAGA 16319 || |||||| || ||||| || ||||||||||||| | || | | ||| |||| Sbjct 59230719 TCCAGGCATTAACCCCCGTTTTTTCAACCAGAATATCGAA-CAGAAGCTTCCGCTGAAGA 59230661 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || |||||| | |||||||| | || || || ||| | || | || | Sbjct 59230660 AAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGTTTCGGACCCAT--C 59230603 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 || |||| | |||||| || || | || | |||| || || || || || Sbjct 59230602 GA-TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCAC 59230544 Query 16440 TAAACAATTT-CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||||||| ||||||| | | | ||| | || |||| || | ||| ||||||||| Sbjct 59230543 GGAACAATTTGCTCTTTT-CGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTAC 59230485 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGC 16557 || || || || || ||||| ||||| || || || |||||| ||||| |||||||| || Sbjct 59230484 ATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGAGCCTCGGC 59230426 Query 16558 TATTTGTACTTC-CACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || | | || | |||| || |||||||| ||||| ||||| Sbjct 59230425 AACCTGGACATCTTTCATGAA--CCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 59230368 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || |||||||| || | | || | ||||||| |||| | ||||| || | | | Sbjct 59230367 GCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 59230308 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGC 16734 || | ||| |||| | ||| ||||||||| |||||| |||| | |||| || Sbjct 59230307 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGAT-GCCATGGC 59230249 Query 16735 CTTTTTATACATTTTCCAAAT 16755 || || ||||||| |||||| Sbjct 59230248 TTTCTTGTACATTTCCCAAAT 59230228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414323287840