Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-15 >seq10 Length=82529941 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 28954 GTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGG 29013 ||||| | ||||| ||||| ||||||| | || || || ||||| ||| || || Sbjct 1142503 GTGTACAGATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGG 1142444 Query 29014 AACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCG 29073 || | |||| || | | | || | || || || || || ||||| | ||| Sbjct 1142443 AAAGCTCAGACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCC 1142384 Query 29074 TAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCG 29133 ||| || || || || |||||||||||||| || || |||||| | || | |||| Sbjct 1142383 CAGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCG 1142324 Query 29134 ATTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||| ||||| ||||| || ||||||||| ||||| Sbjct 1142323 ATTACAACATTCAAAAGGAGTCCACTCTTCACTTGGTG 1142286 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| || ||||| || ||||| || |||||| ||||| Sbjct 500444 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTGGAA 500385 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | ||| |||| |||||||| |||||||| ||||| ||||||||| Sbjct 500384 GATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCAC 500334 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| ||||| || || ||||| ||| || ||| | | Sbjct 1142268 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 1142209 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || ||||| || || || || ||||| | ||| ||| || Sbjct 1142208 CGACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 1142149 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| || |||||||| ||||| || || || || || || | || |||||||| Sbjct 1142148 GCAAAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAA 1142089 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || ||||||||||| || |||||| ||||| Sbjct 1142088 CATCCAGAAGGAATCAACCCTTCACTTGGTG 1142058 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | || || ||||| ||||| || |||||| || |||| | Sbjct 1141584 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGTTC 1141525 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| || ||| || ||||| ||| | || ||| || Sbjct 1141524 TGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 1141465 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| | || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 1141464 GCAAAGGTTGATATTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 1141405 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||||||||||||| || ||||| | ||||| Sbjct 1141404 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 1141372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335937355860