Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10 138 1e-27 seq7 120 3e-22 seq11 113 4e-20 seq1 95.1 1e-14 seq12 91.5 1e-13 >seq10 Length=82529941 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| || | ||||||||||||||||||||| || || | Sbjct 1142267 TTCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGG 1142326 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| || | || || ||||| ||||||||| | || || ||||||||||| || Sbjct 1142327 CGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGG 1142386 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||||| ||| || | | | | || || | ||| Sbjct 1142387 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTTTCCA 1142446 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | |||||||||||||| ||||| Sbjct 1142447 CCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||||||| ||||||||||| ||||| ||||||||| Sbjct 1141129 CCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCC 1141188 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | || || ||||| || || ||| | || ||||||||||||||| || Sbjct 1141189 AGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAGATCAGTCTCTGCTGGTCCTGTGGG 1141248 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | | | |||||| |||| Sbjct 1141249 ATTCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATGGTATCAGAACTCTCCACC 1141308 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || || || || || || ||||| || ||||| Sbjct 1141309 TCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 1141355 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||||||| || | || || ||||| || ||||| || || | Sbjct 1142039 TTCCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAG 1142098 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| | ||||||| ||||| ||||| ||| | || || || |||||||| || Sbjct 1142099 CAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGG 1142158 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||||| || || | | | | || || | || Sbjct 1142159 GAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAA 1142218 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| |||||||| || || || ||||| || || ||||||||| Sbjct 1142219 CCTCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATT 1142268 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| || || || ||||| || | ||||| ||||| || || Sbjct 1141843 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTTCCG 1141902 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| ||| | |||||||||||| |||||| ||| Sbjct 1141903 GCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTA 1141962 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | || || | ||| |||||||| || || || || Sbjct 1141963 ACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTCAAAGTC 1142022 Query 21159 TTGACAAATATTTGCATT 21176 || || || ||||||||| Sbjct 1142023 TTCACGAAAATTTGCATT 1142040 >seq7 Length=79292169 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | |||||| ||||||| |||| || ||||||||||| ||||| ||||||| Sbjct 77536405 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 77536346 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || || | ||||| ||||| ||||| ||| |||| | |||||||| || || Sbjct 77536345 CCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGG 77536286 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| || || | | ||| || || | ||| Sbjct 77536285 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAA 77536226 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||| || ||||| | || || ||||| |||||||| Sbjct 77536225 CCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||| ||| |||||||| || || || ||||| || Sbjct 77536631 CCACCACGGAGACGGAGGACAAGGTGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCA 77536572 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || || | || | ||||||||||| || Sbjct 77536571 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 77536512 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| |||||| | | ||| ||| ||| |||| Sbjct 77536511 ATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATAGTGTCAGAACTCTCCACC 77536452 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||| ||||| || || || ||||| || |||||| Sbjct 77536451 TCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 77536404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | ||||||||||| || || || ||||| || Sbjct 77535719 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCT 77535660 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||| ||| || || ||| | || | ||||||||||| ||| Sbjct 77535659 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 77535600 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||| || |||||| Sbjct 77535599 ATGCCTTCCTTATCCTGGATCTT 77535577 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||||||||| || ||||| ||||| || Sbjct 77535947 CCACCACGGAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 77535888 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || || | || | ||||||||||| ||| Sbjct 77535887 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 77535828 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| ||||| | | | | || || | ||| Sbjct 77535827 ATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACC 77535768 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| ||||| | || || || || || ||||| Sbjct 77535767 TCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 77535721 >seq11 Length=66223686 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| || || | ||||| ||| ||||| || || ||||||||||| || Sbjct 536204 CCGCCACGGAGCCTCAGGACAAGATGCAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 536145 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || ||| | || || ||||| || || || Sbjct 536144 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 536085 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | | | ||||||| | |||| Sbjct 536084 ATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACC 536025 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||| || || | || || ||||| || ||||| Sbjct 536024 TCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 535978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||| || | ||| | || ||||| ||||| ||||| || || | Sbjct 535066 TTCCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAG 535007 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || ||| || | || || |||||||| || ||| | || ||||||||||| || | Sbjct 535006 CAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAG 534947 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| ||||| ||| || | | | || ||| ||| Sbjct 534946 GAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGA 534887 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| ||||| | || || |||||||| ||||| Sbjct 534886 CCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 534838 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| || || || || ||| || | || || |||||||| || Sbjct 535262 GTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 535203 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||||||||||| || || ||| Sbjct 535202 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCTTTG 535143 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | ||| || | || || ||||| ||||| | ||| Sbjct 535142 ACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTT 535083 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| ||||||||| Sbjct 535082 TTAACAAAGATTTGCATT 535065 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || || || || |||||||| || || |||| || | ||||| || || Sbjct 535724 TGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGCCAACGTCCTTCCATCCTCAAGTTGC 535665 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || | |||||||||||| || | || |||||||| ||||||| Sbjct 535664 TTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTT 535605 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||| || | | ||| ||||| ||| |||| ||||| ||||| || || Sbjct 535604 GCTTTAACATTGTCGATGGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTC 535545 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 || || ||||||||||||||||| Sbjct 535544 AATGTCTTGACAAATATTTGCAT 535522 >seq1 Length=109333515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | ||| | |||||||||||| || ||||| ||||| || Sbjct 87072262 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 87072321 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| || || || |||| | | ||||||||| ||| Sbjct 87072322 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 87072381 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | | ||| || || | ||| Sbjct 87072382 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 87072441 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| || ||||| || |||| ||||| || || || ||||| || Sbjct 87072442 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 87072491 >seq12 Length=83305730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| || || ||| || | ||||| ||||| || || Sbjct 82214214 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCG 82214273 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | || ||||||||| || | |||||||||||| ||||| || Sbjct 82214274 GCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 82214333 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | ||| || | |||||| |||||||| || | || Sbjct 82214334 ACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTC 82214393 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || |||||||| Sbjct 82214394 TTCACAAAGATCTGCATTTT 82214413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| ||||| || || ||| || | ||||| ||||| || || Sbjct 82262360 GTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCT 82262301 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | ||||||||||| || | |||||||||||| ||||| || Sbjct 82262300 GCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTA 82262241 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | ||| || | |||||| |||||||| |||| || Sbjct 82262240 ACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTC 82262181 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || |||||||| Sbjct 82262180 TTCACAAAGATCTGCATTTT 82262161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259138244592