Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-16 >seq10 Length=82529941 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25027 GTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGG 25086 ||||| | ||||| ||||| ||||||| | || || || ||||| ||| || || Sbjct 1142503 GTGTACAGATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGG 1142444 Query 25087 AACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCG 25146 || | |||| || | | | || |||| || || || || ||||| | ||| Sbjct 1142443 AAAGCTCAGACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCC 1142384 Query 25147 TAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCG 25206 ||| || || || || |||||||||||||| || | |||||| | || | |||| Sbjct 1142383 CAGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCG 1142324 Query 25207 ATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||| ||||||||||| || ||||||||| ||||| Sbjct 1142323 ATTACAACATTCAAAAGGAGTCCACTCTTCACTTGGTG 1142286 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||||| || ||||| || ||||| || |||||||||||| Sbjct 500444 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTGGAA 500385 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| |||| |||||||| ||||| || ||||| ||||||||| Sbjct 500384 GATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCAC 500334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||| ||||| || |||||| || |||| | Sbjct 1141584 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGTTC 1141525 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||| || ||| || ||||| ||| | || ||| || Sbjct 1141524 TGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 1141465 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| | || ||||| ||||| || ||||||||| | || | ||||||||||| Sbjct 1141464 GCAAAGGTTGATATTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 1141405 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||| |||||||| || ||||| | ||||| Sbjct 1141404 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 1141372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796739920968