Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq11 111 2e-19 seq10 105 1e-17 seq7 104 4e-17 >seq11 Length=66223686 Score = 111 bits (122), Expect = 2e-19 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 535522 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 535581 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| || || ||||| || || || | Sbjct 535582 -GATACCATCGACAATGTTAAAGCA-AAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 535639 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| ||||| ||| | |||||| | | || || | |||||| | Sbjct 535640 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACA 535699 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||||||||| |||| | ||| | || | ||||||| || Sbjct 535700 ACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCAT 535751 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || || || || || ||||||||| | ||| | || ||| Sbjct 535065 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 535124 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || || |||| | ||| ||||||||||| || |||||||| || || || | Sbjct 535125 A-GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 535183 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| | Sbjct 535184 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 535243 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || || || | || | || | || | || |||||||| Sbjct 535244 ACATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTAT 535295 Score = 93.3 bits (102), Expect = 6e-14 Identities = 169/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 522654 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 522595 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAA-GAAGGTATACCACCTGAT 124655 ||||| || ||| ||||| || || || ||||| ||| || ||||| || || | Sbjct 522594 -GATACTATCAACAATGTTAAAGCA-AAGATCCAAGACAAAGGAGGGTATTCCTCCAAAC 522537 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || || | || ||||| ||| | ||| | || ||| | | || || | |||||| Sbjct 522536 CAGCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTAC 522477 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || ||||| ||| | ||||| |||| | ||| | ||| | ||||||| || ||| | Sbjct 522476 AACATTCAGAAACAGTCAACCCTGCACCTTGTTCTTCGTCTTAGAGGTGGCATGCAAATT 522417 Query 124776 T 124776 | Sbjct 522416 T 522416 >seq10 Length=82529941 Score = 105 bits (116), Expect = 1e-17 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||||||||| ||||| |||||||| || || || |||||||| ||||||||||| Sbjct 500447 CAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTG 500388 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || ||| || |||| | | ||||| || ||||| |||||||||||| Sbjct 500387 GAAGATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACT 500340 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || ||||| || || || | ||| | ||| | Sbjct 1141811 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1141752 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| || ||||||||||| ||||| || || Sbjct 1141751 GACACCATTGACAATGTTAAGGCTAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 1141692 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| || | ||||| |||| || | | ||||| || Sbjct 1141691 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGTCGTACCCTTGCTGATTACAAC 1141632 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | |||||||| || Sbjct 1141631 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 1141582 >seq7 Length=79292169 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||| || ||||| | ||| | Sbjct 77535265 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 77535324 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | || || || || ||||| ||||| || || || ||||| Sbjct 77535325 GATACAATCGACAACGTTAAGGCTAAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAG 77535384 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| || || ||||| || || ||||| | || || ||| ||||| || Sbjct 77535385 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 77535444 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| |||| |||||||| Sbjct 77535445 ATCCAGAAGGAGTCTACCCTCCATTTGGTGCTTCGTCTACGTGGTGGTAT 77535494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455886681600