Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq10 102 9e-17 seq12 100 3e-16 seq11 93.3 5e-14 seq7 93.3 5e-14 seq6 82.4 9e-11 >seq1 Length=109333515 Score = 120 bits (132), Expect = 3e-22 Identities = 146/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||||||||| ||||| || | || || |||||||| || ||||| Sbjct 97684338 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 97684279 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | |||||||||||| | || | | ||||||| | ||| | || | ||||| | Sbjct 97684278 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 97684220 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||||||||||| || || | |||||| || || ||||| || || || || Sbjct 97684219 GTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 97684160 Query 43172 AAAGATTTGCATTTT 43186 ||||| |||||||| Sbjct 97684159 GAAGATCTGCATTTT 97684145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || | Sbjct 87072273 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 87072332 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 87072333 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 87072392 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || ||||| | | | |||||| || || || || | ||||| Sbjct 87072393 GTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 87072452 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || |||||||| || || || ||||| ||||| || Sbjct 87072453 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 87072491 >seq10 Length=82529941 Score = 102 bits (112), Expect = 9e-17 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| |||||||||||| |||||||| || || || || | Sbjct 1142280 ACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGGGTACGGCC 1142339 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || | ||||||||| | || | || ||||| Sbjct 1142340 ATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 1142399 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 |||| ||| || ||||| | | | ||||| ||| |||||| || | || Sbjct 1142400 GTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGT 1142456 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAATACAA 43200 |||||| || || || || || || ||||| || ||||| | ||| | ||| ||| Sbjct 1142457 GATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCATCTGTACACAAAATTCAA 1142512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| | ||||| ||||| || | || |||||| || || ||||||||||| Sbjct 1141584 TCCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 1141643 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || |||||||| || || || || | | ||||||||| | || Sbjct 1141644 AAGGGTACGACCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 1141703 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | || |||||| ||| |||| | | | | | | | | ||||| ||||| Sbjct 1141704 AATACCTTCTTTGTCC-TGAATTTTAGCCTTAACATTGTCAATGGTGTCAGAACTTTCCA 1141762 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || ||||| || | ||||| |||||||||||||| Sbjct 1141763 CCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1141811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||| || ||||| | || || |||||||| || || || Sbjct 1141848 CTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTTCCGGCAAA 1141907 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | || ||||||||| | || | || ||||||||| ||| || ||| | | Sbjct 1141908 GATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATT 1141967 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| || || | |||||||| || || || | ||||| || Sbjct 1141968 GTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTCAAAGTCTTCAC 1142027 Query 43172 AAAGATTTGCATT 43184 || ||||||||| Sbjct 1142028 GAAAATTTGCATT 1142040 >seq12 Length=83305730 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 82214219 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 82214278 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | || ||||||| | ||| | || | | | | | Sbjct 82214279 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 82214337 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || || | || || || |||||||| || ||||| | Sbjct 82214338 TGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCA 82214397 Query 43171 CAAAGATTTGCATTTTT 43187 ||||||| ||||||||| Sbjct 82214398 CAAAGATCTGCATTTTT 82214414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| || || || | || || |||||||| || ||||| Sbjct 82262354 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCGAAA 82262295 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | ||||||||| | || | || ||||||||| ||| | || | | | | | Sbjct 82262294 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 82262236 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | || | |||| || || || || | || || || ||||||||||| ||||| || Sbjct 82262235 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 82262176 Query 43172 AAAGATTTGCATTTTT 43187 |||||| ||||||||| Sbjct 82262175 AAAGATCTGCATTTTT 82262160 >seq11 Length=66223686 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 535917 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | | || || || || |||||||| || || | ||||| ||||| | || Sbjct 535916 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 535857 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 43134 | | |||||||| | ||| | |||| || | | | || | || || | || | Sbjct 535856 ATACCCTCCTTGT-CTTGAATCTTTGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 535799 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || || || || || || | ||||| |||||||||||||| Sbjct 535798 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 535750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||||||||| || || || | || || ||||| || ||||| || Sbjct 535257 CTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAA 535198 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | ||||||||| | || | | ||||||| | ||| |||| | ||||| Sbjct 535197 GATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACAT 535139 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | || || || || || || || || | Sbjct 535138 TATCGATGGTGTCTGAGCTC---TCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTT 535082 Query 43168 TTACAAAGATTTGCATT 43184 | ||||||||||||||| Sbjct 535081 TAACAAAGATTTGCATT 535065 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||||||||| |||||||| |||| | || || || ||||| || || || Sbjct 535485 CTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAA 535426 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| ||||||||| | || | | ||||| ||| ||| |||| | | ||| Sbjct 535425 GATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTATCC-TGAATTTTGGCCTTCACGT 535367 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| ||| || || | |||||||| || || || || ||||| | Sbjct 535366 TGTCAATGGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGA 535307 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 535306 CAAAGATCTGCAT 535294 >seq7 Length=79292169 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | | | |||||| |||| || ||||||||| || ||||| || || Sbjct 77536404 TCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGC 77536345 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || |||||||| ||||| || || | | |||||| || | || Sbjct 77536344 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGGG 77536285 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTC 43132 | | ||||||||| ||| || |||| | | | |||||| ||| || Sbjct 77536284 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTC---TC 77536228 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||||| || || || ||||| |||||||||||||| Sbjct 77536227 AACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| ||||| || || || | || || ||||||||||||||||| Sbjct 77536596 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 77536537 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | | ||||||||| | || | | |||||||||| ||| | || | ||| | Sbjct 77536536 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 77536478 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| ||||| || | |||||||| || || || | |||| Sbjct 77536477 TGTCGATAGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCT 77536421 Query 43168 TTACAAAGATTTGCATT 43184 | |||||||| |||||| Sbjct 77536420 TCACAAAGATCTGCATT 77536404 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||||||||||||||| Sbjct 77536140 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 77536081 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 77536080 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATT 77536021 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| || || | |||||||| || || || || ||||| || Sbjct 77536020 ATCAATGGTGTCGGAGCTTTCTACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 77535961 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 77535960 AAAAATCTGCAT 77535949 >seq6 Length=60730942 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| | || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 58518984 AAAAATTAACGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 58519043 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 58519044 TTACCACTATACTAC 58519058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817514227360