Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq11 111 1e-19 seq12 98.7 6e-16 seq7 96.9 2e-15 seq1 95.1 8e-15 seq4 86.0 4e-12 >seq11 Length=66223686 Score = 111 bits (122), Expect = 1e-19 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || |||||||| || || || | |||| |||||||| ||||| ||||| | Sbjct 536204 CCGCCACGGAGCCTCAGGACAAGATGCAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 536145 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | |||||| || || || ||||||| ||| || || | ||| Sbjct 536144 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 536085 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||||||| ||||| | || | | || | ||| | || | Sbjct 536084 ATCCCT-TCCTTGTCCTGTATCTTT-GCTTTCACATTGTCAATAGTATCAGAGCTCTCCA 536027 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | |||| ||||| || || || || ||||| |||||||||||||||||| ||| Sbjct 536026 CCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATCCCTC 535973 >seq12 Length=83305730 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || ||| ||||| ||||||||||| | ||| ||| | || Sbjct 82262375 AGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCC 82262316 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| ||||||||||| | || ||||||||| || | || |||||||| Sbjct 82262315 TCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC 82262256 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || || || || | || || || Sbjct 82262255 TGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTC 82262196 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 82262195 TTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 82262164 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | ||| ||| | || || | |||||| || |||||| Sbjct 82214220 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAA 82214279 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | || |||||||| ||||| ||| | || | Sbjct 82214280 ATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTG 82214339 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || || | || || || ||||| || || || |||||| Sbjct 82214340 TCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACA 82214399 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 82214400 AAGATCTGCAT 82214410 >seq7 Length=79292169 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || ||||| |||||||| || | || ||| |||| Sbjct 77535476 AGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCC 77535417 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| || |||| ||||| || ||| | | ||||| || Sbjct 77535416 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCC 77535357 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||| || || | ||||| || Sbjct 77535356 TGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTC 77535297 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||||||||||||||||||||||||| Sbjct 77535296 TTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 77535264 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||| ||||||| ||| | || || || || ||||||||||| | Sbjct 77536404 TCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGC 77536345 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||||||||| || ||||| | || |||||| || ||| Sbjct 77536344 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGGG 77536285 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | | || | |||| || || Sbjct 77536284 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAAC 77536225 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| ||||| || || || |||||||| ||||| Sbjct 77536224 CTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | || || ||||| ||||||||||||| Sbjct 77536175 CCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 77536116 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||| || | || ||||||||| ||| Sbjct 77536115 AGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 77536056 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | |||| ||| || Sbjct 77536055 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTGTCGGAGCTTTCTACC 77535996 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || |||||||| || || ||||| |||||||| Sbjct 77535995 TCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 77535949 >seq1 Length=109333515 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| ||||||||||||| || ||| | || Sbjct 87072277 AGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCC 87072336 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| | ||||||||||| ||| | | |||||||| Sbjct 87072337 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCC 87072396 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | |||| || || || || | ||||| || Sbjct 87072397 TGGATC-TTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGT 87072455 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 87072456 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 87072489 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| |||||||| || | || ||| | || || | |||||| || ||||| | Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 97684278 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCG 34318 | | ||||||||||| || | | |||||||| ||||| ||||| | || | Sbjct 97684277 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTA-GCTTTGACATTG 97684219 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| ||||||| || || | |||||| || || || || ||||||||||| Sbjct 97684218 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 97684159 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 97684158 AAGATCTGCAT 97684148 >seq4 Length=77197300 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 ||||| || |||| ||| || |||||| ||| |||||| || | || ||| | || Sbjct 55588983 AGCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTACACCAAGGTG-CGGCCATC 55588925 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | |||||| || || ||||| |||| |||||||| ||| | | || ||||| Sbjct 55588924 CTCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGGATTCCTTCTTTGTC 55588865 Query 34297 GGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 |||||| || |||| || | | || | || | | ||||||| |||| || |||| Sbjct 55588864 TTGTATCTTG-GCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGG 55588806 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCT 34385 |||| | ||| ||||||||||| || |||| Sbjct 55588805 TTTTACTGGT-AGAGTTTTCACGAATATCT 55588777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071952750720