Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 145 7e-30 >seq2 Length=59803892 Score = 145 bits (160), Expect = 7e-30 Identities = 562/872 (64%), Gaps = 27/872 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||||||||| ||| ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 59231084 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 59231025 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CA 16047 | ||| ||| ||||| ||||||| ||||| | || || | ||| | | | || Sbjct 59231024 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCT--GAGCATT-GTACATCTTGTCA 59230968 Query 16048 T--CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | ||||| | ||| ||||| || || ||||| ||||| || | |||| ||||| Sbjct 59230967 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 59230908 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 | |||||||| | | | ||| | || || | || | ||||||| | Sbjct 59230907 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 59230848 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACT----ATTTAACGGAGGGTTTAATAAGTG 16221 || || || | || | || ||| | || | ||| | | ||| || Sbjct 59230847 ACAGCATCTGCAACAATTCCCCTGACT-CGCTCCTCAGTTAGCTTCGTCCTTAGCAAACT 59230789 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | || || ||| ||||||||||| ||||| |||||||| || |||||||| || Sbjct 59230788 GTAAAGCAA---ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 59230732 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 ||| || || | || ||||||| || |||||||| | ||| ||||| | || || Sbjct 59230731 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAGAATATCG----AACAGA 59230676 Query 16342 A----CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | || ||||| || |||||||| ||||| || ||||| |||||| || | | Sbjct 59230675 AGCTTCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGG 59230616 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457 || | | || ||||| ||||| || || || | || |||||| | Sbjct 59230615 TT---TCGGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGA 59230559 Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 | |||| |||||| || || | | ||||| | ||| || || | || | Sbjct 59230558 TTGTCTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCA 59230499 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAG 16576 || ||||| ||||| || ||||| |||||||| || || || || || ||||| |||| Sbjct 59230498 ACAGCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAG 59230439 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | ||| |||| | || || || |||||| | || | ||| || ||| Sbjct 59230438 CA-CGAGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACG 59230380 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696 || || || || |||||||| ||||| | || | || |||| |||| | Sbjct 59230379 ATGCCGTCTGAGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGAT 59230320 Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 | || ||| ||||| | | ||| | || | |||||| |||||||| ||||| ||| Sbjct 59230319 GTTAGGTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAA 59230260 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 || || | || || || ||||||| ||| || Sbjct 59230259 GATGCCATGGCTTTCTTGTACATTTCCCAAAT 59230228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511930623200