Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq4 107 2e-18 >seq2 Length=59803892 Score = 111 bits (122), Expect = 1e-19 Identities = 374/580 (64%), Gaps = 2/580 (0%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||||||||||||||| || |||||||||||||| |||| ||||| || || ||| Sbjct 59230781 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 59230722 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || |||||||| | ||| ||||| | | || || ||| Sbjct 59230721 AATCCAGGCATTAACCCCCGTTTTTTCAACCAGAATATCGAACAGAAGCTTCCGCTGAAG 59230662 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806 || || || || ||| ||||| || || | | || | | | | | | Sbjct 59230661 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGTTTCGGACCCATCG 59230602 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| |||||| | || ||||||| || || ||||| || || || Sbjct 59230601 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGG 59230542 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || || | | ||||| | ||| | | || | || | | ||||| ||||| Sbjct 59230541 AACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 59230482 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||| ||||| || || || ||||| || ||||||||| || ||||| | | | Sbjct 59230481 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACC 59230422 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || ||||| ||| || ||| | || | ||||| || || || || | || Sbjct 59230421 TGGACATCTTTCAT-GAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGC 59230363 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 |||||| || || | ||| | || || | |||| | |||| || ||||| | Sbjct 59230362 AAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTG 59230303 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | ||| | || | ||| |||||||| || ||||| ||| ||||| | || || Sbjct 59230302 ACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTT 59230243 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||||||| ||| || | |||||| ||| ||||| ||| Sbjct 59230242 GTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATA 59230203 >seq4 Length=77197300 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| |||||| || || ||||||| ||| ||||||||||| ||||||| || Sbjct 61314996 TTGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTG 61314937 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || ||||| | ||| || || | ||| Sbjct 61314936 AGACATCAAATGATATGTCTTGATGACAGATTCAATATCGTCTTTGTGGATTCCAACAGA 61314877 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTAT-TCTGTTTAAGTAGAT 38578 ||| ||||| |||||||||||||| ||||| | || ||| || | ||||| || | Sbjct 61314876 TACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTACCATGAATCTTTAA-AAGGT 61314818 Query 38579 ACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 | || |||| | ||||| | ||||| ||| ||| | | ||||| |||||| Sbjct 61314817 AAGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTAT 61314762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524729721280