Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 4e-13 seq1 86.0 5e-12 >seq7 Length=79292169 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| || |||||| || | |||||||| | Sbjct 77535491 CCACCACGTAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 77535432 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||| || || ||||| || || | | || ||||| | || Sbjct 77535431 AGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGA 77535372 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | ||| || | || || Sbjct 77535371 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 77535312 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| |||||||| |||||||||||||| || ||||| Sbjct 77535311 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 77535265 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| || | |||||| || | || ||||||||| | ||||| || | | Sbjct 77536403 CCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCC 77536344 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | || ||||| ||||||||||| | ||| ||||| | || Sbjct 77536343 AAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGGGA 77536284 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | ||||| || | | |||||| ||| ||| || Sbjct 77536283 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCG-GAGCTCTCAAC 77536225 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || || || ||||| |||||||| Sbjct 77536224 CTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 >seq1 Length=109333515 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||| | | |||||| | || || | || || ||||| || ||||||||||| Sbjct 97684326 TTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGC 97684267 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 || || | || | |||||| || || ||| ||||||| || ||| |||||| Sbjct 97684266 TGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCG 97684207 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | | || || || | ||| || || || || || ||||||||||| || || |||||| Sbjct 97684206 CTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGCATT 97684147 Query 43111 TT 43112 || Sbjct 97684146 TT 97684145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369544224696