Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 174 2e-38 seq4 91.5 2e-13 >seq2 Length=59803892 Score = 174 bits (192), Expect = 2e-38 Identities = 588/909 (65%), Gaps = 20/909 (2%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||||||| ||| || || || || || | || || || ||||||||||| ||| Sbjct 59231084 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 59231025 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 | || || ||||| ||||||| ||||| | |||| || || || | | | Sbjct 59231024 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAA 59230965 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||||| || | |||||| || || | || ||||| ||| | |||||| || | | Sbjct 59230964 CCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCA 59230905 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGA 41996 |||||||| | || | |||||||| |||| | ||| | | | ||| || | Sbjct 59230904 TTCATTCCCACCAGAGCACAAGGAAGAGCATCACAC-ACGAACTCCCT-TTCTATCTCCA 59230847 Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCA-----CTCGGTGGATACAATAAATG 42051 | || |||| | ||| || ||| || ||| || || || | || || Sbjct 59230846 CAGCATCTGCAACAATTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTG 59230788 Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111 | | | |||||| || ||||| ||||||| ||| || ||||| |||||| || || Sbjct 59230787 T----AAAGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 59230732 Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 || || || | ||| ||||||| || || ||||| | ||| ||||| || || Sbjct 59230731 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAGAATATCGAACAGAAGCT 59230672 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---C 42228 ||| ||||| || ||||| || ||||| || | | | ||| | | | Sbjct 59230671 TCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGTTTC 59230612 Query 42229 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 || | ||| ||||| | ||||| | |||||||||| |||||||| || || Sbjct 59230611 GGACC---CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGT 59230555 Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348 || || ||| || | | | | ||||| | | ||| || | || | || | || Sbjct 59230554 CTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAG 59230495 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 | ||| ||||| || ||||| || || |||||||| || || || || |||||| | Sbjct 59230494 CAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACG 59230435 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468 ||||||| |||||| || ||| | || | | |||| | || || || || || Sbjct 59230434 AGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCC 59230375 Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528 ||| ||| |||||||| || | ||||| | || |||| |||| | | ||||| Sbjct 59230374 GTCTGAGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAG 59230315 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 || | ||| | | |||| | || | ||| ||||||||||||||||| || ||||| Sbjct 59230314 GTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGC 59230255 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 || || || ||||| | ||| || | |||| ||||||||||| ||| |||| Sbjct 59230254 CATGGCTTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCG 59230195 Query 42649 ATTTGGATT 42657 || ||| || Sbjct 59230194 ATCTGGGTT 59230186 >seq4 Length=77197300 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | ||||||||||| || || |||||| | | ||||| | || Sbjct 4560077 AGTTCCAGCATTAAAAAGAGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 4560136 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||| || || ||||| ||||| | ||||| ||||| | ||| | ||| | Sbjct 4560137 ATAAGTCTTGATGGCAGATTCAATATCTTTCTTGTGTATCCCTACAGAGACTCTCATCAG 4560196 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || || || ||||| || | || || || || || | ||| ||| |||| Sbjct 4560197 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 4560256 Query 72597 AGTTTTAAAACCAAAATA 72614 ||||| |||||||| || Sbjct 4560257 GGTTTTGAAACCAAAGTA 4560274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139099329120