Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 1e-15 seq10 87.8 2e-12 >seq11 Length=66223686 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || || |||||||| ||||||||||| Sbjct 535064 CCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 535005 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| || ||||| |||||| ||||||| | |||||||| ||||| Sbjct 535004 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 534945 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||| || ||| | | || | ||||| | || || Sbjct 534944 ATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGACC 534885 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||| | ||| || || ||||| ||||| Sbjct 534884 TCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 534838 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || ||||| ||||||||||| | ||| | ||||| || ||| Sbjct 535268 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 535209 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| ||||||| | ||||| || || || || ||||| ||||| |||||| Sbjct 535208 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 535149 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||| | | || || |||| ||| | ||||| |||||| Sbjct 535148 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTC 535089 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || || |||||||| Sbjct 535088 AGAGTTTTAACAAAGATTTGCAT 535066 >seq10 Length=82529941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || |||||||| || ||||||||||| || || || ||||| | |||| Sbjct 500335 TGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTTCTACCATCTTCCAATTGT 500394 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC--GGTAA 143096 || |||||| | ||||| | |||||||| ||||||||||||||||| || ||||| Sbjct 500395 TTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATCCTGGTAA 500451 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || ||||| || || ||||||||||| Sbjct 1142041 CCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCA 1142100 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| || || || || || ||| ||||||| | |||||| || || || Sbjct 1142101 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 1142160 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | ||||| | | ||| || Sbjct 1142161 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACC 1142220 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || ||||| ||||| ||||| |||||||| Sbjct 1142221 TCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 1142267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014323947840