Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 7e-16 seq12 95.1 9e-15 seq11 95.1 9e-15 seq7 84.2 2e-11 seq1 82.4 6e-11 >seq10 Length=82529941 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||||||||| || | || |||| || Sbjct 1142059 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 1142118 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | |||| | ||| ||||| ||||| ||||| ||||| Sbjct 1142119 AGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 1142178 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| ||| |||| || || | ||| ||||| || Sbjct 1142179 ATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1142238 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| |||||| || ||||||||||| Sbjct 1142239 CCTGTCAAAGTTTTCACGAAAATTTGCAT 1142267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || || || | ||||| || || || ||||| || |||||||| || | | Sbjct 82034575 CTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATAATCA 82034634 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 || | |||||||| ||| | |||| || | |||||| || ||||||||||||||| Sbjct 82034635 TCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTG 82034694 Query 15269 TC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| |||||| || ||| | || ||||| | | | | | ||||| | ||||| Sbjct 82034695 TCTTCAATCTTTGCT-TTAACATTGTCAATGGTGTTGGAACTCTTCACATCCAGAGTAAT 82034753 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAATACT 15387 ||| || || | |||||||| ||||| |||||||| | | || | ||| | || | | | Sbjct 82034754 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCATCTGT-AAGACAAAGTATTGAAAGT 82034812 Query 15388 TATA 15391 |||| Sbjct 82034813 TATA 82034816 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||||||||| || | | |||| || Sbjct 1141603 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCGTCCTCA 1141662 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | ||||| | || ||||| |||||| ||||||||||| | Sbjct 1141663 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 1141722 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || ||||| || | |||| || || | ||| || || || Sbjct 1141723 ATTTTAGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGTCTTG 1141782 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || ||||| |||||||| Sbjct 1141783 CCAGTCAAGGTCTTCACAAAGATTTGCAT 1141811 >seq12 Length=83305730 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || ||| ||| | || || | || Sbjct 82214208 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 82214267 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| || || ||||| |||||| ||||| ||||| ||| || Sbjct 82214268 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 82214327 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || ||||| ||||||||||| || || || ||| Sbjct 82214328 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTC 82214387 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || || || ||||| || ||||| ||| Sbjct 82214388 AGGGTCTTCACAAAGATCTGCATTTTT 82214414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || ||| ||| | || || | || Sbjct 82262366 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGC 82262307 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| | || ||||| |||||| ||||| ||||| ||| || Sbjct 82262306 TTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTA 82262247 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || ||||| ||||||||||| || || || || Sbjct 82262246 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTT 82262187 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || || || ||||| || ||||| ||| Sbjct 82262186 AGGGTCTTCACAAAGATCTGCATTTTT 82262160 >seq11 Length=66223686 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| ||||||||||| || ||| | ||||| | ||| Sbjct 535268 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 535209 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || ||||| | |||| | || ||||| ||||| ||||| ||||| |||||| Sbjct 535208 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 535149 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || ||||| || | || || || | || || || || || || Sbjct 535148 GCT-TTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGT 535090 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| ||||| |||||||| Sbjct 535089 CAGAGTTTTAACAAAGATTTGCAT 535066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | ||| | || ||||| || ||||| || ||||||||||| Sbjct 535750 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTG 535691 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | || | || || | ||| || ||||| | ||||| | || ||||| | Sbjct 535690 CCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAG 535631 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| || || ||||| || |||||| || ||| | || |||||||| | | || Sbjct 535630 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTAACATTGTCGATGGTATCTGAACTCTCA 535572 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || ||||||| || || ||||| |||||||| Sbjct 535571 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 535522 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||| | ||||||||||| || ||| | ||||| | ||| Sbjct 522899 TGAAGGGTGGACTCCTTTAGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 522958 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACAAATTTT 15279 || ||||| | |||| | || ||||| | ||| |||| ||||| ||| ||| Sbjct 522959 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGAAATACCTTTCTTGTCTTCAATTTTA 523018 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || ||||| || | || || || | || || || || || || Sbjct 523019 GCT-TTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGT 523077 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| ||||| |||||||| Sbjct 523078 CAGAGTTTTAACAAAGATTTGCAT 523101 >seq7 Length=79292169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || || || ||||||||||| |||| | | |||| || Sbjct 77535473 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTCC 77535414 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || ||| | || | | ||| || || ||||||||||| || || Sbjct 77535413 AACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTGG 77535354 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || || ||||| | |||| || |||| ||| || || || Sbjct 77535353 ATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTT 77535294 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| || ||||| Sbjct 77535293 CCGGTGAGAGTTTTCACAAAGATCTGCAT 77535265 >seq1 Length=109333515 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| || ||||||||||| |||| | | | ||||| | || || || ||| | | Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 97684278 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATT 15292 |||| || || ||||| |||||| ||||| ||||| ||| || ||| || ||| | Sbjct 97684277 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCT-TTGACATTG 97684219 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || || ||||| ||| || || | || || || || || || |||||||| || Sbjct 97684218 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 97684159 Query 15353 AAAATTTGCATATT 15366 || || ||||| || Sbjct 97684158 AAGATCTGCATTTT 97684145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179147031292