Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 8e-16 seq10 93.3 4e-14 >seq7 Length=79292169 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || ||| | ||||| ||||| || ||||||||||| || ||||| |||| Sbjct 77536405 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 77536346 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | ||||| ||||| || || ||| |||| | ||||||||||| || Sbjct 77536345 CCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGG 77536286 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| || || || || | | ||| || ||| ||| Sbjct 77536285 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAA 77536226 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || || | || || ||||| |||||||| Sbjct 77536225 CCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 >seq10 Length=82529941 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| |||||||||||||| || ||||| ||||||| || | | || || ||||| Sbjct 1141152 GTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTG 1141211 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || ||||||||||| ||| || | ||||| ||||| ||| || Sbjct 1141212 CTTCCCTGCAAAGATCAGTCTCTGCTGGTCCTGTGGGATTCCCTCCTTGTCCTGAATCTT 1141271 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | ||||| | |||| || | || |||||||| || || Sbjct 1141272 AGCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGT 1141331 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 1141332 CAAGGTCTTCACAAAAATCTGCAT 1141355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572739368728