Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 3e-13 seq1 87.8 1e-12 seq7 84.2 1e-11 >seq10 Length=82529941 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| || | ||| | ||| ||||| ||||| ||||||||||||| ||| | | | || Sbjct 82034577 CAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAG-CAAGTGTA--TAATC 82034633 Query 33217 ATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 |||| ||||| ||||||| | ||| ||| | ||| || || | ||| || |||||||| Sbjct 82034634 ATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTT 82034693 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || |||| ||| || | | ||| |||| | | || |||||||| || Sbjct 82034694 GTCTTCAATCTTTGCTTTAACATTGTCAATGGTGTTGGAACTCTTCACATCCAGAGTAAT 82034753 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| | |||||||| || || |||||||| Sbjct 82034754 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 82034789 >seq1 Length=109333515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 |||| || || |||||||||| | | | || || || | |||||||| || | Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 97684278 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | || || |||||||||| || || ||||| || || |||| ||| || | | Sbjct 97684277 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 97684218 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 ||| |||||| | | || ||| || || || ||||| || |||||||||||||| |||| Sbjct 97684217 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 97684158 Query 33360 AAATTTGCATGTT 33372 | || ||||| || Sbjct 97684157 AGATCTGCATTTT 97684145 >seq7 Length=79292169 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | || ||||| || || |||||||| |||| | || | || || Sbjct 77535702 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGGGTGCGGCCATCTTC 77535643 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| |||||||| ||| || || | |||||||| | ||| |||||||| || || Sbjct 77535642 CAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTG 77535583 Query 33280 AATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| |||| | || | | ||| ||||| | || || || || || ||||| Sbjct 77535582 GATCTTAGCCT---TGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGT 77535526 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||||||||| || ||||| || ||||| Sbjct 77535525 CTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777553378776