Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq10 91.5 1e-13 seq7 82.4 5e-11 >seq11 Length=66223686 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | ||||||| ||| || || ||| || || || || || || | Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC-TGC 535918 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | |||| || | |||||| || ||||| ||||| || || ||||| | || Sbjct 535917 AAGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 535858 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || ||| ||| ||| ||| || | ||| ||||||| ||| || Sbjct 535857 AATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 535798 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | |||||||| || || || |||||||| ||||| ||||||||| Sbjct 535797 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCATG 535749 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| ||||| | |||||||| |||| | ||| || | Sbjct 535678 CATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCT 535619 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || ||| ||| || | | | ||||||| ||| || || | |||| Sbjct 535618 TGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCAACCTCCAAAGTAA 535559 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || || || || ||||| ||||||||||||||| Sbjct 535558 TTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 535521 >seq10 Length=82529941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| || | || ||||| | ||| || || || || |||||||| |||||| Sbjct 1141356 ACCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGC 1141415 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| | |||| ||||| || || || ||||||||||||| ||||||||| | || Sbjct 1141416 TAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAATATCAACCTTTGCTGGTCTGGTGG 1141475 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||| || ||| || || || | ||| || || | ||||| Sbjct 1141476 GATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTGTCAATGGTGTCAGAACTTTCCAC 1141535 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || || |||||||| || |||||||| Sbjct 1141536 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1141583 >seq7 Length=79292169 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || ||| ||| || || ||||| || || || || |||| || Sbjct 77535702 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGGGTGCGGCCATCTTC 77535643 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || ||||||||||| ||||||| |||||||| | || | ||||| ||||| Sbjct 77535642 CAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTG 77535583 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || ||||| | ||| || |||| || || || | ||||| || || Sbjct 77535582 GATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTT 77535523 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || | ||||||||| || || ||||| Sbjct 77535522 ACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777548113776