Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=59803892 Score = 113 bits (124), Expect = 4e-20 Identities = 480/745 (64%), Gaps = 19/745 (3%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||| || ||| ||||| || | |||||| || ||||| || || || || ||| Sbjct 59231084 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 59231025 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---A 12961 | ||| ||| ||||| |||| || ||||| | || || | ||| | || | Sbjct 59231024 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCT--GAGCATT-GTACATCTTGTCA 59230968 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | || || | |||||||||||||| |||||||||||||| | |||| ||||| Sbjct 59230967 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 59230908 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 | |||||||| | | ||| | ||| || | || | ||||||| || Sbjct 59230907 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 59230848 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT--TTGATAG-ATGC 13138 || || || ||| || | || | | || || || | || | | ||| | | Sbjct 59230847 ACAGCATCTGCAACAATTCCCCTGACT-CGCTC-CTCAGTTAGCTTCGTCCTTAGCAAAC 59230790 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | || | || ||| ||||||||||||||||| ||||| ||||| |||| ||| ||| Sbjct 59230789 TGTAA-AGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTT 59230731 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 || || |||| || ||||| | ||| |||||||| | ||| ||||| | | || | | Sbjct 59230730 GAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAGAATATCG-AACAGAAGCT 59230672 Query 13259 CCCG-aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 ||| || || || |||||||| ||||| || | ||| | ||| | | || Sbjct 59230671 TCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGT--- 59230615 Query 13318 ATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 || || | || ||||| |||||| || || || | || ||| || || Sbjct 59230614 -TTCGGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTG 59230556 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 | || ||||| || || | | ||||| | | || || || | || | || Sbjct 59230555 TCTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACA 59230496 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 || || ||||| || ||||| ||||| || || || |||||||| ||||| ||| | Sbjct 59230495 GCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCAC 59230436 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 |||||| | ||||| || || || ||| | || | ||| || ||| || | Sbjct 59230435 GAGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGC 59230376 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAG 13581 |||| || |||||||| ||||| Sbjct 59230375 CGTCTGAGGCGGCAAAAAAGGCAAG 59230351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982336968824