Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq7 91.5 1e-13 seq12 87.8 2e-12 >seq1 Length=109333515 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || ||| |||||| || |||||||| || || || || || | |||| Sbjct 87072279 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGAGTACGACCATCCT 87072337 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || |||| ||||||||||| || || | | |||||||||| Sbjct 87072338 CAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCT 87072397 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || |||| | | ||||| |||| |||||| ||| | || || || | Sbjct 87072398 GGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCT 87072457 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGT-GTCTTGA 48736 | || || || |||||||| || ||||||||| | |||| || Sbjct 87072458 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTCGTCTGGA 87072499 >seq7 Length=79292169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || || |||||| || |||||||||||||| | || ||||||| Sbjct 77535474 CACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTC 77535415 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| ||| || | || | | ||||||||| || | | |||||| ||| Sbjct 77535414 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 77535355 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || ||||| | | ||| ||| | || || || Sbjct 77535354 GATCTTAGCCTTAACGTTGTCG--ATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTC 77535297 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||||||||||||||| ||||||||| Sbjct 77535296 TTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 77535264 >seq12 Length=83305730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | ||| | ||||| |||||| Sbjct 82214208 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 82214267 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || |||| || |||||||| || || | | ||||||||| ||| || Sbjct 82214268 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 82214327 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||||| ||| | || || || || || || Sbjct 82214328 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTC 82214387 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 82214388 AGGGTCTTCACAAAGATCTGCAT 82214410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251138392012