Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 127 1e-24 seq4 120 2e-22 seq6 118 6e-22 seq2 118 6e-22 seq10 116 2e-21 seq11 113 2e-20 seq5 111 8e-20 seq1 111 8e-20 seq9 105 3e-18 >seq3 Length=75414019 Score = 127 bits (140), Expect = 1e-24 Identities = 80/87 (92%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 3365014 TAAAAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 3365073 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 3365074 CGCTCTAACCAACTGAGCTAATGGGCC 3365100 Score = 114 bits (126), Expect = 7e-21 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| ||||||| | ||||||||| | | |||||||| ||||||||||||||||| Sbjct 6372650 AAATAACAAAAAATAA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 6372706 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 6372707 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 6372739 Score = 113 bits (124), Expect = 2e-20 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| |||| ||| | || ||| ||||||||| | | |||||||| ||||||||| Sbjct 69932848 AAATGCAGAAATAAGATGTAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 69932907 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 69932908 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 69932948 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 6354929 AAAAATAGTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 6354988 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 6354989 CTCTAACCAACTGAGCTAATGGGCC 6355013 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 59865327 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 59865386 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 59865387 CTGAGCTAATGGGCC 59865401 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 9910354 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9910295 Query 11515 CTGAGCTAATGGGCC 11529 |||| |||||||||| Sbjct 9910294 CTGAACTAATGGGCC 9910280 >seq4 Length=77197300 Score = 120 bits (132), Expect = 2e-22 Identities = 89/104 (86%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAA---TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||||||| | | |||||||| | ||| ||||||||| | | |||||||| |||||| Sbjct 263317 AAATATAAATGTTATAAAAAAAATTAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCT 263258 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 263257 TCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 263214 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 574513 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 574454 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 574453 TGAGCTAATGGGCC 574440 >seq6 Length=60730942 Score = 118 bits (130), Expect = 6e-22 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || ||| || || ||||||||||||| | | |||||||| |||||||||||||||||| Sbjct 38609615 ATGAATCAAGAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 38609674 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 38609675 CACGACGCTCTAACCAACTGAGCTAATGGGCC 38609706 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| || ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 54016068 ATAAAAAAGAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 54016125 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 54016126 ACGCTCTAACCAACTGAGCTAATGGGCC 54016153 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 59429144 AAAAAATTTA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 59429201 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 59429202 GCTCTAACCAACTGAGCTAATGGGCC 59429227 >seq2 Length=59803892 Score = 118 bits (130), Expect = 6e-22 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| ||||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 51061584 AAAAAATTAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 51061525 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 51061524 ACGCTCTAACCAACTGAGCTAATGGGCC 51061497 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 36058809 AAAAAATAAAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 36058868 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 36058869 GCTCTAACCAACTGAGCTAATGGGCC 36058894 Score = 113 bits (124), Expect = 2e-20 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | || |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 36210909 AAAAAATAAGAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 36210851 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 36210850 GCTCTAACCAACTGAGCTAATGGGCC 36210825 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| |||| ||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 50920471 ATATAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 50920414 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 50920413 ACGCTCTAACCAACTGAGCTAATGGGCC 50920386 Score = 113 bits (124), Expect = 2e-20 Identities = 82/94 (87%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 11437 AATT-AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||| || ||||||| | ||||||||| | | |||||||| |||||||||||||||| Sbjct 55994024 AATTCAAAAAAAAATTA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 55994080 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 55994081 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 55994114 Score = 111 bits (122), Expect = 8e-20 Identities = 85/101 (84%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| | | ||||| ||||| | |||||||||| | | |||||||| ||||||||| Sbjct 44693147 AAAAAAAAAATTATAAAAAAGT----TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 44693202 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 44693203 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 44693243 >seq10 Length=82529941 Score = 116 bits (128), Expect = 2e-21 Identities = 86/100 (86%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||||| || ||||||| | | | ||||||||| | | |||||||| |||||||||| Sbjct 75606276 AATATACAAA-AATAAAATAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 75606334 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||||||||||||||||||| Sbjct 75606335 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 75606374 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||| | |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 75185474 AAAAATAAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 75185533 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 75185534 ACGCTCTAACCAACTGAGCTAATGGGCC 75185561 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 76080251 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 76080310 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||||||||| || Sbjct 76080311 TGAGCTAATGGGCCATC 76080327 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 82396561 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 82396620 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 82396621 TGAGCTAATGGGCC 82396634 >seq11 Length=66223686 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 16208652 AAAAAAAAAGTATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 16208593 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 16208592 GACGCTCTAACCAACTGAGCTAATAGGCC 16208564 >seq5 Length=77991103 Score = 111 bits (122), Expect = 8e-20 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 4549715 AAAAAATTA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 4549659 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 4549658 GCTCTAACCAACTGAGCTAATGGGCC 4549633 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5786875 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5786816 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 5786815 TGAGCTAATGGGCC 5786802 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||| |||||||||||||||||||| | |||| Sbjct 1932912 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAATCAAC 1932971 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1932972 TGAGCTAATAGGCC 1932985 >seq1 Length=109333515 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 106448404 AACAAAAAAAGAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 106448347 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 106448346 GACGCTCTAACCAACTGAGCTAATGGGCC 106448318 >seq9 Length=84057508 Score = 105 bits (116), Expect = 3e-18 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| || ||| ||| | | ||||||||| | | |||||||| |||||||||||||||| Sbjct 4802039 AATAAAAAAATAATTTATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 4802098 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||| |||||||||||||||||||| Sbjct 4802099 AGCACAACGCTCTAACCAACTGAGCTAATGGGCC 4802132 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491161756912