Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=59803892 Score = 114 bits (126), Expect = 1e-20 Identities = 352/535 (66%), Gaps = 17/535 (3%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | |||||| || || || ||||| ||||| |||| || || Sbjct 59231070 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 59231011 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||||||||||||| | || || | || || | | |||||| | || Sbjct 59231010 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 59230951 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||| || |||||||| ||||| |||| || ||| || || | |||||| || | || Sbjct 59230950 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 59230891 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC---AACAAT 21420 ||||||||| | || || ||||||| || || || |||||| Sbjct 59230890 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 59230831 Query 21421 TATATTTATTA--TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478 | | | | |||| | || | || | || ||| | | |||||| Sbjct 59230830 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTGT----AAAGCAAACAC 59230776 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| ||||||||||| || || ||||| ||||| || || ||||| || Sbjct 59230775 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 59230716 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAAT 21597 |||||||| || | ||||| ||||| ||||| || || | || ||| |||||||| Sbjct 59230715 GGCATTAACCCCCGTTTTTTCAACCAGAATATCGA-ACAGAAGCTTCCGCTGAAGAAAAT 59230657 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCA-ATA 21656 || ||||| |||||| || || || || ||| || | || ||| | ||| | Sbjct 59230656 CCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGT---TTC-GGACCCATCGA 59230601 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGC 21711 |||| |||||||| ||||| | || || |||| ||||| ||||| || Sbjct 59230600 TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGC 59230546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900720214880