Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq10 91.5 1e-13 seq1 86.0 6e-12 >seq10 Length=82529941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 26830 ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAAC 26889 ||||||| || | || ||| ||||||| ||||||||||| || || | ||||||| Sbjct 82034728 ACACCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCAAC 82034669 Query 26890 AAAGACTCATTTACGGCGGCAAACAACTCGAAGATGA-TAGAAACGTCAGC-GACTATAA 26947 ||||| | | || || || |||||| | | ||||| || | || | || || || || Sbjct 82034668 AAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATTATACACTT--GCTGATTACAA 82034611 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || ||||| || ||||| ||| |||| ||| | ||||| Sbjct 82034610 TATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGTCTTTGTGGAGG 82034563 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||| ||||| | |||||||| | |||||| | || | ||| ||| Sbjct 1142495 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 1142436 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | |||||| ||||| ||||| ||||| || || || || Sbjct 1142435 ---GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 1142379 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | | ||||| || || ||||||| | | | || ||| || Sbjct 1142378 CAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTAC 1142319 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||| || || ||| | || |||| || | ||| | || |||| Sbjct 1142318 AACATTCAAAAGGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 1142267 >seq1 Length=109333515 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| | || | || || Sbjct 87072491 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 87072432 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||| |||||||| || || || Sbjct 87072431 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 87072372 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | | |||| || ||| || || || || |||| | | | | |||||| Sbjct 87072371 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 87072312 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| ||||||| || || Sbjct 87072311 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 87072277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662328200640