Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 107 5e-18 seq2 86.0 2e-11 >seq4 Length=77197300 Score = 107 bits (118), Expect = 5e-18 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| || | ||| || |||| | | |||||| ||||| | Sbjct 61315201 ATGAAAGATGATAGCATTGAGGGCATATATGATACTCTTACGGAATGTGCTGTTATTAGC 61315260 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || |||||||||||||| | ||||| | ||||| || | ||||| || Sbjct 61315261 AAATCAGCTGGGGGAATTGGTGTATCTGTGCACAACATACGTGCTACTG-GGAGTTATAT 61315319 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || |||||| | ||||| ||||| ||||||||| | |||| Sbjct 61315320 TCGTGGAACAAACGGAACATCAAATGGGATTGTTCCTATGCTGCGTGTGTTTAATGATAC 61315379 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| || || || || || || || || || | |||||| Sbjct 61315380 TGCCAGATATGTTGATCAAGGGGGTGGCAAAAG-AAAGGG 61315418 >seq2 Length=59803892 Score = 86.0 bits (94), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 ||||| || ||| | | || |||||| |||||||| |||||||| ||| || Sbjct 59230618 TTCGCTGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTC 59230677 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 ||| | || || ||| | |||||||| | | ||||| || |||| || ||||||||| Sbjct 59230678 TGTTCGATATTCTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAG 59230737 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 |||||| |||| || ||| | || |||||||||||| |||| || Sbjct 59230738 TTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTTTA 59230787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353399609384