Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq11 100 2e-16 seq7 91.5 1e-13 >seq10 Length=82529941 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | |||||||| | || ||| | || || || | Sbjct 1142495 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 1142436 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| ||||| |||||||| || || || || Sbjct 1142435 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 1142376 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | || |||||| ||| Sbjct 1142375 CAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAAC 1142316 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || |||| || ||| Sbjct 1142315 ATTCAAAAGGAGTCCACTCTTCACTTGGTG 1142286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||||| || ||||||||||||||||| ||||| ||||||||||||| | || || || Sbjct 500451 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACA 500392 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 | | ||||||| |||| | | ||||| |||||||| |||||||| || |||| Sbjct 500391 ATTGGAAGATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 500335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | | |||||| | ||||| | || || || | Sbjct 82034789 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTTCC 82034730 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||| || | || ||| ||||||| ||||||||||| || || | |||||| Sbjct 82034729 AACACCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCAA 82034670 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGA-CAGAAACGTCAGC-GATTATA 24168 || ||| | | || || || || ||| | | ||||| | | || | || ||||| | Sbjct 82034669 CAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATTATACACTT--GCTGATTACA 82034612 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 | |||||||| || |||||||||||| | || || || Sbjct 82034611 ATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 82034575 >seq11 Length=66223686 Score = 100 bits (110), Expect = 2e-16 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || ||||| | || || | || |||||| Sbjct 534838 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 534897 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 534898 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 534957 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||||||||||| | | || || || || ||||||| | ||| || | || ||||| | Sbjct 534958 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTACA 535015 Query 24169 ACATTCAAAAAGAATCTACAATTCAT 24194 |||| |||||||| || || ||||| Sbjct 535016 ACATCCAAAAAGAGTCAACCCTTCAT 535041 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | || || || | || || | || |||||| | Sbjct 535065 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 535124 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | |||||| || ||| ||||| ||||| || || || || || Sbjct 535125 AGACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 535184 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTAT 24167 ||||| ||||| | | || || || || ||||||| | ||| || | || ||||| Sbjct 535185 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTAC 535242 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 ||||| ||||| || || || |||| Sbjct 535243 AACATCCAAAAGGAGTCCACCCTTCA 535268 >seq7 Length=79292169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || ||| | || ||| | || || ||| | | Sbjct 77536177 ATGCAAATCTTTGTTAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCC 77536236 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 77536237 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 77536296 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||||| | |||||||| ||||| |||| | | || | || || || || Sbjct 77536297 CAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCG-CACTTTGGCGGACTACAA 77536355 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || || || | || || ||| | || |||| |||||| Sbjct 77536356 CATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTAGGCTGAGGGGAGGA 77536404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935937121860