Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 113 4e-20 seq7 109 5e-19 seq11 100 2e-16 seq1 100 2e-16 >seq10 Length=82529941 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || | || || | || ||||| || Sbjct 1141584 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGTTC 1141525 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || || | ||| | || | ||| |||||||| || || ||||| |||| Sbjct 1141524 TGACACCATTGACAACGTAAAGGCCAAGATTCAG-GACAAAGAGGGTATCCCACCAGACC 1141466 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || ||||| ||||| || || ||||||| | || | | |||||||| Sbjct 1141465 AGCAAAGGTTGATATTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACA 1141406 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || ||||| || || ||| | ||| | ||||| || ||||| Sbjct 1141405 ATATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 1141357 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | ||||| | || ||||| ||| Sbjct 1141811 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1141752 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || |||| ||| ||||||||||| |||||||| ||| Sbjct 1141751 GACACCATTGA--CAATGTTAAGGCTAAAATTCAG-GACAAAGAAGGTATTCCACCAGAC 1141695 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| || || | || || | ||| || | | |||||| Sbjct 1141694 CAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGTCGTACCCTTGCTGATTAC 1141635 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || || || || || | || |||| |||| Sbjct 1141634 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAA 1141583 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || |||||||| || || ||||||| | || || || || Sbjct 1142268 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 1142209 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||| || ||| ||||| ||||| ||||| || ||| Sbjct 1142208 CGACACCATTGA--CAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 1142151 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||||||||| || | || || | | || | | |||||| Sbjct 1142150 CAGCAAAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTAC 1142091 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || ||||| Sbjct 1142090 AACATCCAGAAGGAATCAACCCTTCACTTGGTGCT 1142056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| || || ||||||| | || || || || Sbjct 1142040 AATGCAAATTTTCGTGAAGACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 1141981 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || || || |||| || ||| ||||| ||||| ||||| || || Sbjct 1141980 CGACACCATTGA--CAATGTTAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 1141924 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || |||||||| || || | || |||| || || | | ||||| Sbjct 1141923 CCAGCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGGACCCTTGCTGATTA 1141864 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || || || || Sbjct 1141863 CAACATCCAGAAGGAGTCAACCCTTCACTTGGTCCT 1141828 >seq7 Length=79292169 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| |||||||| || ||||||| | || |||||| || Sbjct 77536404 AATGCAGATCTTTGTGAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTGGAGAGTTC 77536463 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||||||| || || |||| || | ||| ||||| || ||||| ||||| || Sbjct 77536464 TGACACTATCGA--CAATGTGAAAGCTAAGATTCA-GGACAAGGAGGGGATCCCACCAGA 77536520 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || || || || || | || |||| ||||| | | || || Sbjct 77536521 CCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTA 77536580 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 |||||| || || || || || || || Sbjct 77536581 CAATATCCAGAAGGAGTCTACTCTGCA 77536607 >seq11 Length=66223686 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || ||| | || || ||| || Sbjct 535750 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 535809 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||||||| | ||| ||||| || || ||||| || ||| Sbjct 535810 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 535866 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || |||||| | || |||| | ||| | | || ||| Sbjct 535867 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTAC 535926 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || ||| | ||| | | | |||||||| Sbjct 535927 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 535976 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || || ||| || Sbjct 535522 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 535581 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || |||| ||| ||| ||||| || || ||||| || ||| Sbjct 535582 GATACCATCGA--CAATGTTAAAGC-AAAGATCCAAGACAAGGAGGGTATTCCTCCAGAC 535638 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || || ||| | || |||| | || ||| |||||| Sbjct 535639 CAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTAC 535698 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| || || || | || || | || ||||| || Sbjct 535699 AACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGG 535748 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||| || || Sbjct 535294 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 535353 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | |||| ||| || || ||||||||||| || ||||| Sbjct 535354 GATACCATTGACAACGTGAAGGCCAAAATTCAG-GATAAGGAAGGGATTCCTCCAGACCA 535412 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||||||||| ||| | || |||| | || ||| || ||||| Sbjct 535413 GCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 535472 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| || || ||||| | || || Sbjct 535473 TATTCAGAAAGAGTCTACCTTACATCTTGTTCT 535505 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || || ||| || Sbjct 522654 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 522595 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGG-ATTCCACCTGA 25114 || |||||| | || || |||| ||| ||| ||||||| |||| ||||| || | Sbjct 522594 GATACTATCAA--CAATGTTAAAGC-AAAGATCCAAGACAAAGGAGGGTATTCCTCCAAA 522538 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || ||||| || | ||| | ||||||| | || ||| ||||| Sbjct 522537 CCAGCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTA 522478 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| ||| | || || || || | || || | || ||||| || Sbjct 522477 CAACATTCAGAAACAGTCAACCCTGCACCTTGTTCTTCGTCTTAGAGGTGG 522427 >seq1 Length=109333515 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | ||||| | || || ||||| || Sbjct 87072488 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCTTCC 87072429 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| ||||||||||| || ||| Sbjct 87072428 GACACCATCGA--CAATGTCAAAGCCAAGATCCAG-GACAAGGAAGGGATTCCCCCAGAC 87072372 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| ||||| || || | || |||| ||| ||| | | ||| ||| Sbjct 87072371 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 87072312 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || ||| | ||||| Sbjct 87072311 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 87072277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327936625780