Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 201 1e-46 seq8 87.8 2e-12 seq6 87.8 2e-12 seq1 87.8 2e-12 seq12 86.0 7e-12 seq10 86.0 7e-12 seq5 84.2 2e-11 >seq2 Length=59803892 Score = 201 bits (222), Expect = 1e-46 Identities = 590/894 (66%), Gaps = 15/894 (2%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || ||||||||| | || ||||||||||| ||||| |||| ||| ||| Sbjct 59231070 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 59231011 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | | |||||||| || || || ||| ||| ||| | | ||| Sbjct 59231010 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 59230951 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||||| ||||||||||| |||||||| | | ||||||||| | ||||||||| | || Sbjct 59230950 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 59230891 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | | ||| || ||||| || || ||| || | || || | || || ||| | | Sbjct 59230890 A-GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAA 59230832 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCA 93097 || | | |||| || | || || || | | || |||| | || |||||| Sbjct 59230831 TTCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCA 59230773 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || || ||||||||||||| ||| || |||||||| ||| ||||| || || Sbjct 59230772 AAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGC 59230713 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | | || ||||| || | ||| ||||| ||| || || || || || || ||| Sbjct 59230712 ATTAACCCCCGTTTTTTCAACCAGAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCT 59230653 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || ||||| ||||| | ||| || || || || |||| | | ||||| Sbjct 59230652 TCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGTTTCGGACCCATCG---ATCCAA 59230596 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | ||||| | || || || | || |||||| | ||| || || || || | Sbjct 59230595 CGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAAT 59230536 Query 93338 TAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | ||| | |||| ||||| ||||| | || | | || | ||||| || || Sbjct 59230535 TTG-CTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGA 59230477 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||||| |||||| || || |||||||| || |||||| | ||| || | | ||| || Sbjct 59230476 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGAC 59230417 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||| || || | |||| || || || || || || || || |||||||| Sbjct 59230416 ATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 59230357 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 || | | ||| | || ||||| | ||| | | | || || ||||| | | || Sbjct 59230356 GGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACGAG 59230298 Query 93577 -ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 ||| | || |||||||||||||| || ||||| || ||||| ||||| ||||||| Sbjct 59230297 TATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACA 59230238 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688 | ||||| || | | |||| |||||||| || || ||| || |||| |||||| Sbjct 59230237 TTTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 59230185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 54355245 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 54355188 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 54355187 CGTGGGTTCAAATCCCACTTCTGACA 54355162 >seq8 Length=70546659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 61371762 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 61371821 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 61371822 GTGGGTTCAAATCCCACTTCTGACA 61371846 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 2870623 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 2870682 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||| || ||||| ||||| ||||||| Sbjct 2870683 TGGGTTCAAATCCCACTTCTGAC-AATTATT 2870712 >seq6 Length=60730942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 54621185 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 54621242 Query 126325 GGGTTCGAACCCCACACCTGACAAAT----TATTATTGGAATTTT 126365 |||||| || |||||| ||| ||| | ||||||| |||||| Sbjct 54621243 GGGTTCAAATCCCACAGCTGTCAATTTTTATATTATTTCAATTTT 54621287 >seq1 Length=109333515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/103 (81%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3644782 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3644725 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT--GGA-ATTTTTG 126367 ||| || |||||| ||| || ||| || || ||| ||||||| Sbjct 3644724 TTCAAATCCCACAGCTGTCATATTTTTTTTTGGGACATTTTTG 3644682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 104425535 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 104425594 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||||| ||| || Sbjct 104425595 GTGGGTTCAAATCCCACTTCTGACAAAACATTTTT 104425629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/97 (80%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 108027912 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 108027969 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||| |||||| || Sbjct 108027970 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 108028004 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/98 (80%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 97692166 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 97692109 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| | ||| ||||| | |||| Sbjct 97692108 TTCAAATCCCACAGCTGTC--ATTTTTATTTTATTTTT 97692073 >seq12 Length=83305730 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/97 (80%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 81132382 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 81132325 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| |||||| ||||| || Sbjct 81132324 GCGTGGGTTCAAATCCCACTTCTGACATTTTATTTTT 81132288 >seq10 Length=82529941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 318167 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 318110 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||| || |||||| ||| || |||||| Sbjct 318109 GGGTTCAAATCCCACAGCTGTCATTTTATTA 318079 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3510537 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3510594 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||||| Sbjct 3510595 TTCAAATCCCACAGCTGTCATTTTATT 3510621 >seq5 Length=77991103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||| ||||||||||||||||| | ||| ||||| ||| | | | || Sbjct 71907777 AGTCAGGATGGCCGATTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGGTAGAGGGC 71907836 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||| ||||| || Sbjct 71907837 GTGGGTTCAAATCCCACTTCTGACATTTTATTTTT 71907871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860716470880