Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq10 109 5e-19 seq11 104 2e-17 seq12 89.7 4e-13 seq7 86.0 5e-12 >seq1 Length=109333515 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 |||| |||||||||||||| ||| | |||||| |||||| || || || || ||| || Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 97684279 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| |||||||| ||||| ||||| ||||| |||||| ||| | | Sbjct 97684278 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 97684219 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | ||||| || || | || | ||| || || || |||||||| || Sbjct 97684218 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 97684159 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 97684158 AAGATCTGCAT 97684148 >seq10 Length=82529941 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || |||||||||||||||||| Sbjct 1142266 ATTCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCG 1142325 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||| || || || || |||| || | ||| ||||| || Sbjct 1142326 GCGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGG 1142385 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| ||| | | |||| |||||| | | ||| Sbjct 1142386 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTTTCC 1142445 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || ||||| ||||| |||||||| Sbjct 1142446 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| || ||||| || | ||| || ||||| || |||||||| |||||||| Sbjct 82034562 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGC 82034621 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | ||| | || |||||| ||| | || | | | ||||| || | || Sbjct 82034622 AAGTGTATAATCATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGG 82034681 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGA----TT 114330 ||| ||||||||||| |||||||| ||| | | |||| ||||| |||| || Sbjct 82034682 AATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTCAATGGTGT---TGGAACTCTT 82034738 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || |||| || | || || || | |||||||| ||||| || ||||| Sbjct 82034739 C-ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 82034789 >seq11 Length=66223686 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || || |||||||| ||||||||||| Sbjct 535067 ATTCCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 535008 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| || || ||| Sbjct 535007 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 534948 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||| | | |||| |||||| | ||| Sbjct 534947 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 534888 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || || || ||||| |||||||| Sbjct 534887 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 534838 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || ||||| ||||||||||| Sbjct 535295 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 535236 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| ||||| || Sbjct 535235 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 535176 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||| | | || | |||||| | | ||| Sbjct 535175 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 535116 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || |||||||||||||| ||||| || ||||| Sbjct 535115 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 535066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||| | ||||||||||| | || || ||||||||| ||||| ||| Sbjct 522905 GTGGACTCCTTTAGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 522964 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || | ||| |||| ||||| |||| || ||| Sbjct 522965 GCAAAGATCAGCCTCTGCTGGTCTGGGGAAATACCTTTCTTGTCTTCAATTTTAGCTTTG 523024 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | ||||| || | || | || || |||||||||||| Sbjct 523025 ACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTT 523084 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 523085 TTAACAAAGATTTGCAT 523101 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | || || || || || |||||||| || | ||| | ||| Sbjct 535962 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCATC 535903 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||||||||||| |||| | |||||||||||| || ||||| || || ||||| Sbjct 535902 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 535843 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| ||| | | |||| ||| || | || || |||| || | || Sbjct 535842 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 535783 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || |||| ||| || ||||| || |||||| Sbjct 535782 CTTCCCAGTCAAAGTCTTGACAAAGATTTGCATG 535749 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | ||||| || | ||| ||||||||||| Sbjct 523100 ATTCCACCACGTAGACGGAGGACAAGATGGAG-GTAGACTCGTCTTGGATGTTGTAATCA 523158 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | ||||||||| ||||| ||||| |||| | | ||| || || ||| Sbjct 523159 GCAATTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 523218 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||||| | |||| ||||| | | ||| Sbjct 523219 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGTGTCAGAGCTCTCG 523278 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTT--TACAAAAATCTGCAT 114382 || || | || | || || ||| | || || || ||||| |||||||| Sbjct 523279 ACCTCAAGAGTGATGGTCTTTCCGATGAGCGTCTTAAAACAAATATCTGCAT 523330 >seq12 Length=83305730 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || || || |||||||| || ||| | || || ||| || || || ||||| Sbjct 82214214 GTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACC 82214272 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | ||||| ||||| || ||||||||||| ||||| |||||| || Sbjct 82214273 GGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 82214332 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | || || || || | ||| | || ||||| ||||| || Sbjct 82214333 AACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGT 82214392 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 82214393 CTTCACAAAGATCTGCAT 82214410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || ||||| || || |||||||| || ||| | || || ||| ||||| || || || Sbjct 82262360 GTGGATTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCAAGCTGCTTTCC 82262302 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | | ||| ||||| || ||||||||||| ||||| |||||| || Sbjct 82262301 TGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTT 82262242 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | || || || || | ||| | || ||||| || || || Sbjct 82262241 AACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGT 82262182 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 82262181 CTTCACAAAGATCTGCAT 82262164 >seq7 Length=79292169 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 77536178 ATACCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 77536119 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || || || || ||||||||| |||| | | ||| ||||| || Sbjct 77536118 GCAAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGG 77536059 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||||| | ||| Sbjct 77536058 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTGTCGGAGCTTTCT 77535999 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| || || || |||||||||||||| Sbjct 77535998 ACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 77535949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134338555344