Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 113 9e-20 >seq2 Length=59803892 Score = 113 bits (124), Expect = 9e-20 Identities = 344/527 (65%), Gaps = 16/527 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || |||||||| |||||||| || |||||||| || ||||||||| Sbjct 59230351 CTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATG 59230410 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| || ||| ||||| || ||| ||||| || ||||| || ||||| ||||| Sbjct 59230411 AAAGATGTCCAGGTTGCCGAGGCTCG-TGCTTTCTATGGGTTCCAAATCGCCATTGAGAA 59230469 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | || || ||| ||||| ||| | | |||||||| |||| | | ||| Sbjct 59230470 TATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGA--- 59230526 Query 42602 TAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || | || ||||| || || ||||| || || || | | ||||||||| | | Sbjct 59230527 -AAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAAT 59230585 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| || |||||||| | |||| ||| |||| ||| | |||| || ||| Sbjct 59230586 GGGCCCTTCGTTGGATCGATGGGTCCGA---AACCTTCGCTGAGCGTTTGGTGGCTTTTG 59230642 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || || || |||||| || |||| || || |||||| | || | Sbjct 59230643 CTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCGATATTCTGGTTGAAAAAAC 59230702 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || ||||| ||| | |||||||| || || | || || ||||| || ||| Sbjct 59230703 GGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGC 59230762 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | || ||||| || | || | | || || ||| |||| | |||||| Sbjct 59230763 ACTGTGATTTTGCGTGTTTGCTTTAC---AGTTTGCTAAGGACGAAGCTAACTGAGGAGC 59230819 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 | ||| ||| || | | || || |||||||| || | ||||||| Sbjct 59230820 GAGTCAGGGGAATTGTTGCAGATGCTGTGGAGATAGAAAGGGAGTTC 59230866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339058349120